PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2139690.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 277aa    MW: 31028.9 Da    PI: 5.0505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2139690.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-183988255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  +Aa a++aa++kl+g
  Lj1g3v2139690.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHDAALAYDAAARKLYG 88
                     69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.88E-213898No hitNo description
Gene3DG3DSA:3.30.730.103.9E-303997IPR001471AP2/ERF domain
SMARTSM003801.9E-3639102IPR001471AP2/ERF domain
PROSITE profilePS5103222.263996IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-203996IPR016177DNA-binding domain
PfamPF008471.1E-123988IPR001471AP2/ERF domain
PRINTSPR003672.5E-94051IPR001471AP2/ERF domain
PRINTSPR003672.5E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLKSNMEIEA RKKLKKTAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSHDAALAYD AAARKLYGSD AKLNLPELRK SSSQHCPPFS SGSTQMENQP  120
QILHHYHNMD MATCSGINAN PTVSMVSSQQ VGAGPIYTDS IVSLPSDTMP MPHEIETSYA  180
NVMEKMPHEM ETSYANVMEK VPHEMEKSYA NVMEKEEQSY PVFDNSMPMN EDLPVFDDSI  240
WEEAAMSLDF PMINPEASTG NLADDSAWDP LQTPWYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-204096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2139690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523563.11e-91dehydration-responsive element-binding protein 2D
RefseqXP_028226981.11e-91dehydration-responsive element-binding protein 2D-like
TrEMBLA0A445KVA33e-90A0A445KVA3_GLYSO; Dehydration-responsive element-binding protein 2D
TrEMBLK7KHT13e-90K7KHT1_SOYBN; Uncharacterized protein
STRINGGLYMA04G03070.25e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-43ERF family protein