PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2063230.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | CPP | ||||||||
Protein Properties | Length: 375aa MW: 41695.8 Da PI: 8.9194 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.5 | 7.4e-15 | 138 | 176 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+s+Clk+YCeCfaag +C+ C+C +C+N+ + Lj1g3v2063230.2 138 KQKQCNCKNSRCLKLYCECFAAGIYCDG-CNCLNCHNNVD 176 89**************************.********986 PP | |||||||
2 | TCR | 52.5 | 9.6e-17 | 222 | 261 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN+e Lj1g3v2063230.2 222 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNSE 261 589***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.0E-17 | 137 | 177 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.845 | 138 | 262 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.3E-12 | 139 | 174 | IPR005172 | CRC domain |
SMART | SM01114 | 1.0E-19 | 222 | 263 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.2E-13 | 225 | 260 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MEQCETTLSL APPRKSARQL DFAAVCGGPA HLKLPPPPPP VAQLLLPSIH HLPPSHLELE 60 LHPPGQRPWF YSPPQVQQQR TMQSPVMAQL QAPPPQLVSP VRLLPHPTPV KRLQAMREES 120 PRSHPRNNVE LKDSTPKKQK QCNCKNSRCL KLYCECFAAG IYCDGCNCLN CHNNVDNEAA 180 RQEAVGITLE RNPNAFKPKI ASSPQEPRYS KVDVPEIQVI GKHNKGCHCK KSGCLKKYCE 240 CFQANILCSE NCKCMDCKNS EGSTERRAFF HEEYNLVPPK QAVNAVTSGA VRSFSYGPHI 300 TPKKRKIQEI FSGKSAVDQT VSMTSQYQQE IDPIASSPSS LSASVVSDAN TRTSGPSSST 360 YSIGPFWRMS FRHRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-29 | 130 | 271 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 5e-29 | 130 | 271 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2063230.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009674 | 0.0 | AP009674.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT04O06, TM0487, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027356876.1 | 1e-175 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 2e-93 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2K3NLP3 | 1e-168 | A0A2K3NLP3_TRIPR; Lin-54-like protein | ||||
STRING | GLYMA04G08670.2 | 1e-164 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 6e-91 | Tesmin/TSO1-like CXC domain-containing protein |