PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2050890.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 913aa    MW: 101153 Da    PI: 4.9307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2050890.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.2e-193783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Lj1g3v2050890.1 37 KGQWTPEEDEILRNAVHRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding65.97.5e-2189135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Lj1g3v2050890.1  89 KGPWSKEEDEIIVECVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding48.71.7e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Lj1g3v2050890.1 141 KEAWTQEEELALIHAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1113283IPR017930Myb domain
SuperFamilySSF466899.66E-163389IPR009057Homeodomain-like
SMARTSM007171.4E-153685IPR001005SANT/Myb domain
PfamPF002491.3E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2439100IPR009057Homeodomain-like
CDDcd001671.84E-144083No hitNo description
PROSITE profilePS5129433.01284139IPR017930Myb domain
SuperFamilySSF466898.27E-3286182IPR009057Homeodomain-like
SMARTSM007171.4E-1988137IPR001005SANT/Myb domain
PfamPF002496.1E-1989135IPR001005SANT/Myb domain
CDDcd001677.86E-1791135No hitNo description
Gene3DG3DSA:1.10.10.602.1E-27101142IPR009057Homeodomain-like
SMARTSM007174.0E-15140188IPR001005SANT/Myb domain
PROSITE profilePS5129419.627140190IPR017930Myb domain
PfamPF002491.9E-13141184IPR001005SANT/Myb domain
CDDcd001677.39E-12143183No hitNo description
Gene3DG3DSA:1.10.10.601.6E-21143190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MEGERLTPAP SEGTVDGVQK IRALHGRTTG PTRRSTKGQW TPEEDEILRN AVHRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELIKG PWSKEEDEII VECVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPSIN KEAWTQEEEL ALIHAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLT QLQTVPIAGN PNQPIASTSS RLQRSGDDSG PRGTEEEEAS  240
QCSQESANAG HFPYAGDMSI AVFENGEDYR PNEESNLGNP SQVSCSEPYY ISLGDVSASL  300
PDTACQEDYS AQMIEYTHEP RHITNGENQL SSHALPNISS LGFEHESSQV QNGCIVPSES  360
HDMVNVPFHS SEHMFIPDDE CCRILFSEAM GDYNKGENMI DSNGCASLHS PSSGPSSSGA  420
RLLYTAEANQ LLGSEDQQFI SEAHDNLIYA NGLNSSPCID RNRIDSAAMQ ETPGIENDTS  480
SLVPVNSFCH GSDTIQTSNP RDEEPNGHAE QEEAGALCYE PPRFPSLDIP FLSCDLVQSG  540
GDMQQEFSPL GIRQFMMSSM NCLTPFKLWD SPSRDDSPDA LLRSAAKTFT ATPSILKKRS  600
RDLLSPLSDK RIDKKLEVDM TSTLIKNFSR LDVMFVDNET QHLLSPASVE KLNSGTSVED  660
DRENHREAIK VEQVEEKNES ANLDDKKSEE DTDKSNSEDM TEQRPLDIDS KTTNNVNIVA  720
VTMPQPSGIL VDHDTNDQLL HSPRGGSKSE RVQSSSARKQ KNPCTKVNSP CIRAKEHERL  780
SVAVTCVQSV CSSGPGESSG DHTANDGAFE TYSIFAGTPF RKSLESPSAW KSPAAWKSPW  840
FVNAFLSSPR PGTELTIEDF GYLLSPGDRS YDAIGLMKQV SEQTAVQYAN AHEILENQTH  900
KALLPRDASG NDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.11241e-105pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2050890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527826.10.0transcription factor MYB3R-1
RefseqXP_028235458.10.0transcription factor MYB3R-1-like
RefseqXP_028235459.10.0transcription factor MYB3R-1-like
TrEMBLA0A445K6J20.0A0A445K6J2_GLYSO; Transcription factor MYB3R-4 isoform A
TrEMBLI1K9970.0I1K997_SOYBN; Uncharacterized protein
STRINGGLYMA06G08660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein