PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj1g3v1932810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 198aa MW: 23226.8 Da PI: 10.0951 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.5 | 6.9e-11 | 67 | 117 | 43 | 90 |
FAR1 43 eekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++k ++++++r+r+++r++C k++v+k++ d+kw+v+ + ++HnHel Lj1g3v1932810.1 67 QSKVSEVENQRKRKTSRCNCGSKMVVTKRTigfDEKWVVKYFYNHHNHELL 117 44445689999******************9999****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-8 | 68 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MSGFLMKGKY LILMMMLMNF TIYLHIKVAF RLDVIISTNL VSISQRRIHW VSIKGNLFVI 60 VLVIPKQSKV SEVENQRKRK TSRCNCGSKM VVTKRTIGFD EKWVVKYFYN HHNHELLDDK 120 EVKFLPAYPQ SCILQFLMLV LDSEQMIFES LRRNFIFSVL IAAMFVSQEV AIAATTFFKY 180 CTATVVKLFR FYFMAVEC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 75 | 80 | QRKRKT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj1g3v1932810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10240.1 | 1e-13 | FAR1-related sequence 11 |