PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1821110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 103aa MW: 11430.3 Da PI: 4.2386 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 5e-05 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lj1g3v1821110.1 80 FSCNYCQRKFYNSQALGGHQNAH 102 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.23E-5 | 77 | 102 | No hit | No description |
PROSITE profile | PS50157 | 10.492 | 80 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
METLSQEQNQ TEIKQQHVEE VEEENEAKKE TSLDLNVSGN DSAFGCSSQL NLNTCLDMDL 60 CKASSDNPPD GSDVAEARVF SCNYCQRKFY NSQALGGHQN AHK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.21971 | 1e-171 | cell culture |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1821110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027356907.1 | 3e-32 | zinc finger protein 1-like | ||||
TrEMBL | A0A0R0JJ42 | 3e-28 | A0A0R0JJ42_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G06750.1 | 1e-28 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9619 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-16 | C2H2 family protein |