PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1815540.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 293aa    MW: 32727.6 Da    PI: 6.7122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1815540.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30137195259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs edp+++++tYegeHnh 
  Lj1g3v1815540.1 137 RDGYQWRKYGQKVTRDNPSPRAYFKCSYApSCPVKKKVQRSVEDPTILVTTYEGEHNHA 195
                      7***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-29128195IPR003657WRKY domain
SuperFamilySSF1182903.53E-25133196IPR003657WRKY domain
SMARTSM007745.8E-34136196IPR003657WRKY domain
PfamPF031066.2E-25138194IPR003657WRKY domain
PROSITE profilePS5081125.419138194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEPTTCSVVD TSLNLNVAPS WDTVVDVSVL VEELERLNSE NKRLTETLNH ICDNYLTMQK  60
HLAQLNSNSP DDFEKEAGIP SRKRKAENLF VYGSSGYTEC STITEEEDTI FKRPSTSPKV  120
SKVLVRTEAS DTSLYVRDGY QWRKYGQKVT RDNPSPRAYF KCSYAPSCPV KKKVQRSVED  180
PTILVTTYEG EHNHAHHQAE ISLCSSQSET SGSVPTASSP TLMNPRIGPT FTLDLIQSRL  240
VDNHNAQKSP SSIQQFLVQQ MASSLTRDPN FTAALATAIS GRFLDHTTSM EKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-201381941974Probable WRKY transcription factor 4
2lex_A2e-201381941974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1815540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1445320.0BT144532.1 Lotus japonicus clone JCVI-FLLj-16E24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027355610.11e-130probable WRKY transcription factor 40
TrEMBLI3SVN40.0I3SVN4_LOTJA; Uncharacterized protein
STRINGGLYMA06G06530.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-70WRKY DNA-binding protein 40