PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1809960.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 287aa    MW: 31235.8 Da    PI: 6.2805
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1809960.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.11.7e-08447441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     + C+ +++  ++l+C+ ++ +lC+ C ++ H        H +v+
  Lj1g3v1809960.1  4 KLCDSCKSATATLYCRPDSAFLCAPCDSKVHAAnklasrHPRVT 47
                     68*****************************6567777787765 PP
2zf-B_box24.36.6e-084691342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      + C+ +e+ +++l C+ +   lC +C   +H+       H+++p+
  Lj1g3v1809960.1 46 VTLCEVCEQAPASLTCKADAANLCLSCDHDIHSAnplaarHERSPV 91
                     578*****************************66899999998875 PP
3CCT71.71.8e-24221264144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKrk+R+FeK+irY+sRKa+AesRpR+KGrF+k++
  Lj1g3v1809960.1 221 REAKVMRYREKRKNRRFEKTIRYASRKAYAESRPRIKGRFAKRS 264
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.85148IPR000315B-box-type zinc finger
SMARTSM003369.9E-15148IPR000315B-box-type zinc finger
PfamPF006431.6E-6447IPR000315B-box-type zinc finger
CDDcd000212.13E-8548No hitNo description
PROSITE profilePS5011910.3524491IPR000315B-box-type zinc finger
PfamPF006433.3E-64691IPR000315B-box-type zinc finger
CDDcd000212.30E-64791No hitNo description
SMARTSM003362.1E-74991IPR000315B-box-type zinc finger
PfamPF062033.7E-18221263IPR010402CCT domain
PROSITE profilePS5101716.906221263IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASKLCDSCK SATATLYCRP DSAFLCAPCD SKVHAANKLA SRHPRVTLCE VCEQAPASLT  60
CKADAANLCL SCDHDIHSAN PLAARHERSP VTPFFHSPAA NFLDHQHLFT DAKPEPEAEA  120
AEEEEEAEAA SWLLPTPKEA DLFSESDPLH FLDLEQKISD CVVPVNSNLN HILPSQSHSQ  180
SQSVSSCSME VGVVPEGSTS ASTVVSEISN GGGGYERAVD REAKVMRYRE KRKNRRFEKT  240
IRYASRKAYA ESRPRIKGRF AKRSDDNNNA DLPAAGATGY DGLVPTC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.45830.0cell culture| floral bud| flower| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1809960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103640.0AP010364.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT37F06, TM1931, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502470.11e-107zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T93e-84COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLK7QDB71e-106K7QDB7_PEA; CONSTANS-like c
STRINGXP_007136923.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.12e-81CONSTANS-like 4