PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1787840.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CPP
Protein Properties Length: 93aa    MW: 10395 Da    PI: 8.6491
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1787840.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR21.16.4e-075989939
              TCR  9 kkskClkkYCeCfaagkkCseeCkCedCkNk 39
                     +k++  +kYC C + +  C  eCkC +C N 
  Lj1g3v1787840.1 59 NKTHGSNKYCGCVKMNLRCLLECKCVGCTNP 89
                     5889999**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036382.8E-45988IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MGGAAWANSV IASTMSTIVV KVVDLFGVGC LNNYFGHQFD AYCKREFNYD RRSLCRFSNK  60
THGSNKYCGC VKMNLRCLLE CKCVGCTNPY GEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1787840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103631e-104AP010363.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT61C17, TM2005, complete sequence.