PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1787630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 133aa MW: 15179.5 Da PI: 4.336 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 34 | 5.8e-11 | 108 | 129 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDg++WrKYG+K+vk+s++pr Lj1g3v1787630.1 108 LDDGFKWRKYGKKMVKNSPNPR 129 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-12 | 94 | 130 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-9 | 101 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.909 | 103 | 129 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-6 | 109 | 130 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MTDKNPVSLP PDSPESDFIN QWPQELSEYL KLDDDNQWPD DDDHPDHSFA NSWHVLNQDN 60 QTNQVGDFGG SSSNVEGSST SKSDVNIEDE KAVKEKVSFK TKSEVEILDD GFKWRKYGKK 120 MVKNSPNPRY ICL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1787630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010362 | 1e-137 | AP010362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT12P09, TM1929, complete sequence. | |||
GenBank | AP010363 | 1e-137 | AP010363.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT61C17, TM2005, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003522275.1 | 6e-40 | probable WRKY transcription factor 50 | ||||
Refseq | XP_027190450.1 | 6e-40 | probable WRKY transcription factor 50 isoform X2 | ||||
Swissprot | Q8VWQ5 | 7e-17 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | A0A3Q7YFG5 | 1e-38 | A0A3Q7YFG5_CICAR; probable WRKY transcription factor 50 isoform X2 | ||||
TrEMBL | I1JTZ8 | 1e-38 | I1JTZ8_SOYBN; Uncharacterized protein | ||||
TrEMBL | I3SPD2 | 1e-38 | I3SPD2_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA04G05700.1 | 2e-39 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-17 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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