PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj1g3v1784260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 201aa MW: 23337.1 Da PI: 7.9913 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.4 | 1.3e-09 | 79 | 100 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C++ ++ G+C++Gd+C+FaHg Lj1g3v1784260.1 79 TPCPDLRK-GYCNRGDSCHFAHG 100 68******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-7 | 71 | 102 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-5 | 75 | 101 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.88E-5 | 75 | 104 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 76 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 79 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 110 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MLQIRNLQIP DWDHDTLSVN AFATTPTEDF SSTDHFRMFD FKVNLCQRGR PHDWTDCPYA 60 HPGEKARRRD PRKHHYSATP CPDLRKGYCN RGDSCHFAHG VFECWLHPSR YRTQPCKDGT 120 FCRRRVCFFA HTANQLRVLN HEHVLSSPTS VLNSSSTLST KSFRYGVVSA FSVDEIVRSM 180 RNVQLDEGSE PDFEWISELV K |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.11618 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269|PubMed:16778011}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj1g3v1784260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027355694.1 | 3e-75 | zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | O82307 | 5e-64 | C3H23_ARATH; Zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | Q9FU27 | 2e-63 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A2Z6N5E3 | 1e-72 | A0A2Z6N5E3_TRISU; Uncharacterized protein | ||||
STRING | AES73358 | 6e-73 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25900.2 | 5e-63 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|