PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1638760.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 271aa    MW: 29924 Da    PI: 5.6958
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1638760.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.31e-2975129358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +vrY+eC+kNhA+ +GghavDGC+Ef+++ g+egt +a+ CaAC+CHRnFHR+e+ 
  Lj1g3v1638760.1  75 TVRYRECQKNHAVGIGGHAVDGCCEFLAA-GQEGTLEAVICAACNCHRNFHRKETG 129
                      79**************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2064128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.7E-2776128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.8E-2677127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.73378127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-30194270IPR009057Homeodomain-like
SuperFamilySSF466894.02E-20196269IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-24208264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEFDDHEDLE EEEEEEEEEE EEEGEVEMGF TVAPPGFDSL GNSAARSKTG GGIEPEGGAA  60
ATALGVGRKN GSTGTVRYRE CQKNHAVGIG GHAVDGCCEF LAAGQEGTLE AVICAACNCH  120
RNFHRKETGG EITSYQPRPP QQQPAYHHQF SPYYPRAEPP PSAGYLHHLV TPPLSQHRPL  180
ALPPAGSGGF RREEEDMSNP SSSGGGTKKR HRTRFTPEQK DKMLEFAERV GWRIQKHDEA  240
AVEQFCEEAC IKRHVLKVWM HNNKHTLGKK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-262072661675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.90890.0floral bud
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1638760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136351.11e-122hypothetical protein PHAVU_009G037900g
SwissprotA2Z2597e-72ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH57e-72ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLV7ASQ11e-121V7ASQ1_PHAVU; Uncharacterized protein
STRINGXP_007136351.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-68homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]