PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1537660.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GATA
Protein Properties Length: 345aa    MW: 37361.3 Da    PI: 4.4417
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1537660.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.2e-17196232135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  Lj1g3v1537660.1 196 CQHCGVSEnnTPAMRRGPDGPRTLCNACGLMWANKGT 232
                      *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.1E-75792IPR010399Tify domain
PROSITE profilePS5132012.9145792IPR010399Tify domain
PfamPF062001.2E-96091IPR010399Tify domain
PROSITE profilePS5101712.65125167IPR010402CCT domain
PfamPF062039.5E-15125166IPR010402CCT domain
SuperFamilySSF577161.47E-11189243No hitNo description
SMARTSM004018.2E-12190243IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.88190249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-14194234IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.44E-15195242No hitNo description
PfamPF003201.1E-14196232IPR000679Zinc finger, GATA-type
PROSITE patternPS003440196223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAAVNPPQPL QFEGPAIPLD DDDGAAGDDD DAMDELEEAD VNPVSVAVSA NHEAVVLPSR  60
TSELTLSFEG EVYVFPAVTP QKVQAVLLLL GGRDVQASMS TVEVPLDQSN RGTDGNPKRS  120
NLSRRIASLV RFREKRKERC FDKKIRYTVR KEVAQRMHRK NGQFASLKEG PGSSNWDSAQ  180
SSGQNGTPNS ESLRRCQHCG VSENNTPAMR RGPDGPRTLC NACGLMWANK GTLRVLRKGG  240
RSISVLQSEP DLSIDVKPTV LPGELPVIQD EQGISEDPSE AVAAEVSNNR AVNPGDEELP  300
ESADHFKNSL PLDISHSSPN DDEQEPLVEL SNSSDTDIDI PGSFD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.121570.0cell culture| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1537660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354476.10.0GATA transcription factor 24-like
RefseqXP_027354477.10.0GATA transcription factor 24-like
SwissprotQ8GXL73e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A445KYH10.0A0A445KYH1_GLYSO; GATA transcription factor 24 isoform A
TrEMBLI1JV870.0I1JV87_SOYBN; Uncharacterized protein
STRINGGLYMA04G10340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-70ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]