PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1452940.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 370aa    MW: 41751.7 Da    PI: 9.9167
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1452940.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.52.9e-2462163199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++ +++a+e+      + k++ +++l  +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +
  Lj1g3v1452940.2  62 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGE 152
                      99*****************************63.4445569************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+v+v+r+
  Lj1g3v1452940.2 153 NGELRVGVRRA 163
                      999*****996 PP
2Auxin_resp116.22.8e-38188270183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha+ t+++F+v+Y+Pr+s++eF+v++++++++lk++++vGmRfkm+fe+e+++e+r++Gtvvg++d+d+ +W++S+Wr+Lk
  Lj1g3v1452940.2 188 AWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKTNYTVGMRFKMRFEGEEAPEQRFTGTVVGIEDVDSKSWRDSRWRCLK 270
                      79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.08E-4058191IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-4159177IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-2160162No hitNo description
PfamPF023623.2E-2262163IPR003340B3 DNA binding domain
PROSITE profilePS5086311.87162164IPR003340B3 DNA binding domain
SMARTSM010191.1E-2262164IPR003340B3 DNA binding domain
PfamPF065072.7E-35188270IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MPVYDLPSKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ DENAVEKEPP PPPPPRFHVH  60
SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELAAKDLHGN EWRFRHIFRG  120
QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PPSVISSHSM  180
HLGVLATAWH AILTGTIFTV YYKPRTSPAE FIVPYDQYME SLKTNYTVGM RFKMRFEGEE  240
APEQRFTGTV VGIEDVDSKS WRDSRWRCLK VRWDETSNTP RPDRVSPWKI EPSLAPPALN  300
PLSMPRPKRP RSIAVLSSPD SSVLTREASS KVSVDPLPAN GFPRVLQGQE FSTLRGNIAR  360
LRSLLLGHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-155129264354Auxin response factor 1
4ldw_A1e-155129264354Auxin response factor 1
4ldw_B1e-155129264354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.22660.0floral bud| flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression increases during floral development. Expressed during ovary development with the highest expression on the third day after the flower fully opened. {ECO:0000269|PubMed:21735233}.
UniprotTISSUE SPECIFICITY: Expressed in root, leaf and stem (PubMed:26716451, PubMed:21735233). Also expressed in flower and fruit (PubMed:26716451). Expressed in flower buds about three days before opening including stamen, petal and sepal with the highest in ovary (PubMed:21735233). {ECO:0000269|PubMed:21735233, ECO:0000269|PubMed:26716451}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1452940.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205134.10.0auxin response factor 2A
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A445L2N30.0A0A445L2N3_GLYSO; Auxin response factor
STRINGGLYMA04G37760.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]