PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1318060.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 802aa    MW: 89182.4 Da    PI: 8.7321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1318060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07148168526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +Cr+fa+ G C +G++C+F H 
  Lj1g3v1318060.1 148 PCRDFAA-GKCIRGSQCHFLHH 168
                      8******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0032143169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4147169IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4148168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953148170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.145203231IPR000571Zinc finger, CCCH-type
SMARTSM003560.4203229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037267294IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-4267293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5270292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4272294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MNKSGRKLSS KWDLIDERES EFAPDGVANS NSTSSRWSYK ERNDRLNPRM EFLSKEPLSG  60
GTHSNKYDGT NNEEYRVLDA TIARDTDGSY GMEMSPGFED WKNKHSQSPK NSYSRSSRSR  120
SRSPPHGFKL DSGVNGRNRM RPEGLAQPCR DFAAGKCIRG SQCHFLHHDN QNYENGRESR  180
QRQDRAPGYS APHESGDISL TSGRSDEACI NFAKGRCRFG ASCRHVHHGN SDEFGKVSVG  240
ESSRENDIDN RRLENSFKQG GRHDLNRSAD TPCRFFAFGN CRNGNHCRFS HDRQSGRSPD  300
RRLRDDSSRS NQGGDQVSNR PKLSDSASSN GRLRDDRWRS DGSIADVSKV WDGPKSNDLS  360
AVSNSRKLVE DNQDGIMGAP GHGFSAWPMS DGWDHSLDKN MVHDKTSFSS DKKEPNLWAA  420
GNATANIHTS QPVGTGIWPG DEQMSPDWNV GTSSHFKKNH EQNNLQVAPG HGYNQNAQNV  480
NALHSSSSHA VGQSQPPFSV VPPRARIVEG MQNQELFTEK KYIGEPNIMD ASLLQVGSRN  540
PSTQNMVSKE QLVQLTCLTA SLAQILGTGS QLPQLCSNLN SHDAKDTPSG KPVSIAFSKP  600
DPSIGFQKHN NPSGFSPMIS PSKIIPKESV EMPSLLSNSE QFDDSCKTAF SEEQLVKSKH  660
LIQLQKDENI GDNKESNEMV AEEKRSSRGE NKITKESGPL ESMDQSGGPD EIKKTKDVKG  720
MRAFKGSLVE FIKELLKPTW KEGQITKDDY KEIVKKVTDK VSVTVQRAHV PQTQEKIDRY  780
LSVSKPKLNK LIQAYVEKVQ KA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.86460.0flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1318060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105040.0AP010504.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT20M06, TM1747, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341389.10.0zinc finger CCCH domain-containing protein 38-like isoform X3
RefseqXP_027341390.10.0zinc finger CCCH domain-containing protein 38-like isoform X3
TrEMBLA0A3Q7XDY80.0A0A3Q7XDY8_CICAR; zinc finger CCCH domain-containing protein 55 isoform X2
STRINGXP_004503947.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-14C3H family protein