PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v1301650.4

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C3H

Protein Properties

Length: 1052aa MW: 115198 Da PI: 8.6102

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1301650.4	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	1e-06	132	152	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa GtC++G+ C+F H Lj1g3v1301650.4 132 PCRDFAS-GTCRRGSLCNFLHH 152 8****.***********6 PP
2	zf-CCCH	18.8	3e-06	191	212	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H Lj1g3v1301650.4 191 EACINFAK-GRCRQGSSCKFVHH 212 68****.***********5 PP
3	zf-CCCH	17.2	9e-06	256	276	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa G C+ G C+F+H+ Lj1g3v1301650.4 256 PCKFFAN-GNCRNGKYCRFSHD 276 78888.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.314	127	154	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.9E-4	129	153	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-5	131	152	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-5	131	153	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.54	187	214	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.11	188	213	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-4	251	277	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.366	251	278	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.5E-6	254	276	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1052 aa Download sequence Send to blast
MSEGGRKRSS KWDLIDEPEF APGSKQMRSG RSSADVAGSN SSKWSYSEGN DELKPDYRVS 60 DATMDLDTDR SYSKNMSPLF EERRQNRRSQ SPKSGWGRSV RRSRSRSPPH GFRRDSGIND 120 RIRTRVGGSS QPCRDFASGT CRRGSLCNFL HHDNQNPENS WESKHREDGA PRYSDTHESR 180 DHSFRSGRAN EACINFAKGR CRQGSSCKFV HHNNSDGYGK VSGDELTREK EIDKRRGDSS 240 FEQGGRHGPN RSSDIPCKFF ANGNCRNGKY CRFSHDRQAC RSPDRRSRDD RWASNPSGDH 300 QMFDRPKMSD TASPNRRLRD DRWGSDGNTA DADKVRDSLK RNDAVATSDR AKLIEHKTGN 360 VGVTDPKFTD WPTGDAWGHS LDKSRVLGEP PFLDDKKEAD HWVAENTGAN MHSSQSIGTD 420 IWSDEGKMSP DWNYRLGPSS HIEEYGQNRH GITQGGTYLA TSEHDRVQVA PGHGLYQNAQ 480 SVDGLSQVIS RSPPTQDKHG IMQGGACVAT SEHDRVQVTP GQGFNQNVHS VNSLHSSSGH 540 AVGQSQVTVP ILPSRGVDGT HNREVSTEIM DASLSQVISR NPPTQNKHGI TQGGAYLATS 600 EYDRVEVAPG QGFNQNAQSV NPLHSSSGHA DGQSQVTVPI LPSIGVVGGT HNQEISTEKN 660 CTVESSTMNA SLSQVISRNP PTQNKNGITQ GGTYFATSEH DRVQVAPGQG FNQNSLHSSS 720 GYTIGQSQVA VPILPSRGGI LDGTHNHEVS TEKKYLAEPS IMDGGLSQVI STPTQNMVSK 780 EQIAQLTNLS ASLAHILGTG QQLPQLYAAL NSHDLKDTPS LAKTEVPSMP VSNTSINPDP 840 AVGLPQQYDP TSDSIEPNAD AKKVSAAIPA TKRIAEPAAE IPSQLPDSGR QSRGDSIKPA 900 SSELVKSDKI IQLQPGKNFD VNKDKSGVLA AERRRNSRDA HKNTKEDGPL DNMDQPGGPD 960 EAKKTKDVKE LRAFKFSLAD LVKELLKPAW KEGQVNKEDF KTIVKKVVEK VSGTMQGSQI 1020 PQTKEKIDQY LSVSRTKLTK LVQAYVEKVQ KA

Sequence ? help Back to Top

Protein Sequence Length: 1052 aa Download sequence Send to blast

MSEGGRKRSS KWDLIDEPEF APGSKQMRSG RSSADVAGSN SSKWSYSEGN DELKPDYRVS  60
DATMDLDTDR SYSKNMSPLF EERRQNRRSQ SPKSGWGRSV RRSRSRSPPH GFRRDSGIND  120
RIRTRVGGSS QPCRDFASGT CRRGSLCNFL HHDNQNPENS WESKHREDGA PRYSDTHESR  180
DHSFRSGRAN EACINFAKGR CRQGSSCKFV HHNNSDGYGK VSGDELTREK EIDKRRGDSS  240
FEQGGRHGPN RSSDIPCKFF ANGNCRNGKY CRFSHDRQAC RSPDRRSRDD RWASNPSGDH  300
QMFDRPKMSD TASPNRRLRD DRWGSDGNTA DADKVRDSLK RNDAVATSDR AKLIEHKTGN  360
VGVTDPKFTD WPTGDAWGHS LDKSRVLGEP PFLDDKKEAD HWVAENTGAN MHSSQSIGTD  420
IWSDEGKMSP DWNYRLGPSS HIEEYGQNRH GITQGGTYLA TSEHDRVQVA PGHGLYQNAQ  480
SVDGLSQVIS RSPPTQDKHG IMQGGACVAT SEHDRVQVTP GQGFNQNVHS VNSLHSSSGH  540
AVGQSQVTVP ILPSRGVDGT HNREVSTEIM DASLSQVISR NPPTQNKHGI TQGGAYLATS  600
EYDRVEVAPG QGFNQNAQSV NPLHSSSGHA DGQSQVTVPI LPSIGVVGGT HNQEISTEKN  660
CTVESSTMNA SLSQVISRNP PTQNKNGITQ GGTYFATSEH DRVQVAPGQG FNQNSLHSSS  720
GYTIGQSQVA VPILPSRGGI LDGTHNHEVS TEKKYLAEPS IMDGGLSQVI STPTQNMVSK  780
EQIAQLTNLS ASLAHILGTG QQLPQLYAAL NSHDLKDTPS LAKTEVPSMP VSNTSINPDP  840
AVGLPQQYDP TSDSIEPNAD AKKVSAAIPA TKRIAEPAAE IPSQLPDSGR QSRGDSIKPA  900
SSELVKSDKI IQLQPGKNFD VNKDKSGVLA AERRRNSRDA HKNTKEDGPL DNMDQPGGPD  960
EAKKTKDVKE LRAFKFSLAD LVKELLKPAW KEGQVNKEDF KTIVKKVVEK VSGTMQGSQI  1020
PQTKEKIDQY LSVSRTKLTK LVQAYVEKVQ KA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1301650.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143916	0.0	BT143916.1 Lotus japonicus clone JCVI-FLLj-24I8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020203619.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBL	A0A371GLE0	0.0	A0A371GLE0_MUCPR; Zinc finger CCCH domain-containing protein 38 (Fragment)
STRING	XP_004502920.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-17	C3H family protein