PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v1301650.3

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C3H

Protein Properties

Length: 1163aa MW: 127817 Da PI: 8.9528

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1301650.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	212	232	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa GtC++G+ C+F H Lj1g3v1301650.3 212 PCRDFAS-GTCRRGSLCNFLHH 232 8****.***********6 PP
2	zf-CCCH	18.6	3.3e-06	271	292	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H Lj1g3v1301650.3 271 EACINFAK-GRCRQGSSCKFVHH 292 68****.***********5 PP
3	zf-CCCH	17.1	1e-05	367	387	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa G C+ G C+F+H+ Lj1g3v1301650.3 367 PCKFFAN-GNCRNGKYCRFSHD 387 78888.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.314	207	234	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.9E-4	209	233	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-5	211	232	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-5	211	233	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.54	267	294	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.11	268	293	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-4	362	388	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.366	362	389	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.55E-6	365	387	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence Send to blast
MSEGGRKRSS KWDLIDEPEF APGSKQMRSG RSSADVAGSN SSKWSYSEGN DELKPGKGRS 60 SKDSFSGGRD SNKDNIMNKD YRVSDATMDL DTDRSYSKNM SPLLEERKQK RRSQSPKIGW 120 GSSLRDSNKD DIMNKDYGVW DATMDLDTDR SYSKNMSPLF EERRQNRRSQ SPKSGWGRSV 180 RRSRSRSPPH GFRRDSGIND RIRTRVGGSS QPCRDFASGT CRRGSLCNFL HHDNQNPENS 240 WESKHREDGA PRYSDTHESR DHSFRSGRAN EACINFAKGR CRQGSSCKFV HHNNSDGYGK 300 VSGDELTREK EIDKRRGDSS FEQGGRHGYG KVSVDELTRE KEIDKRRGDS SFEQGGRHGP 360 NRSSDIPCKF FANGNCRNGK YCRFSHDRQA CRSPDRRSRD DRWASNPSGD HQMFDRPKMS 420 DTASPNRRLR DDRWGSDGNT ADADKVRDSL KRNDAVATSD RAKLIEHKTG NVGVTDPKFT 480 DWPTGDAWGH SLDKSRVLGE PPFLDDKKEA DHWVAENTGA NMHSSQSIGT DIWSDEGKMS 540 PDWNYRLGPS SHIEEYGQNR HGITQGGTYL ATSEHDRVQV APGHGLYQNA QSVDGLSQVI 600 SRSPPTQDKH GIMQGGACVA TSEHDRVQVT PGQGFNQNVH SVNSLHSSSG HAVGQSQVTV 660 PILPSRGVDG THNREVSTEI MDASLSQVIS RNPPTQNKHG ITQGGAYLAT SEYDRVEVAP 720 GQGFNQNAQS VNPLHSSSGH ADGQSQVTVP ILPSIGVVGG THNQEISTEK NCTVESSTMN 780 ASLSQVISRN PPTQNKNGIT QGGTYFATSE HDRVQVAPGQ GFNQNSLHSS SGYTIGQSQV 840 AVPILPSRGG ILDGTHNHEV STEKKYLAEP SIMDGGLSQV ISTPTQNMVS KEQIAQLTNL 900 SASLAHILGT GQQLPQLYAA LNSHDLKDTP SLAKTEVPSM PVSNTSINPD PAVGLPQQYD 960 PTSDSIEPNA DAKKVSAAIP ATKRIAEPAA EIPSQLPDSG RQSRGDSIKP ASSELVKSDK 1020 IIQLQPGKNF DVNKDKSGVL AAERRRNSRD AHKNTKEDGP LDNMDQPGGP DEAKKTKDVK 1080 ELRAFKFSLA DLVKELLKPA WKEGQVNKED FKTIVKKVVE KVSGTMQGSQ IPQTKEKIDQ 1140 YLSVSRTKLT KLVQAYVEKV QKA

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence Send to blast

MSEGGRKRSS KWDLIDEPEF APGSKQMRSG RSSADVAGSN SSKWSYSEGN DELKPGKGRS  60
SKDSFSGGRD SNKDNIMNKD YRVSDATMDL DTDRSYSKNM SPLLEERKQK RRSQSPKIGW  120
GSSLRDSNKD DIMNKDYGVW DATMDLDTDR SYSKNMSPLF EERRQNRRSQ SPKSGWGRSV  180
RRSRSRSPPH GFRRDSGIND RIRTRVGGSS QPCRDFASGT CRRGSLCNFL HHDNQNPENS  240
WESKHREDGA PRYSDTHESR DHSFRSGRAN EACINFAKGR CRQGSSCKFV HHNNSDGYGK  300
VSGDELTREK EIDKRRGDSS FEQGGRHGYG KVSVDELTRE KEIDKRRGDS SFEQGGRHGP  360
NRSSDIPCKF FANGNCRNGK YCRFSHDRQA CRSPDRRSRD DRWASNPSGD HQMFDRPKMS  420
DTASPNRRLR DDRWGSDGNT ADADKVRDSL KRNDAVATSD RAKLIEHKTG NVGVTDPKFT  480
DWPTGDAWGH SLDKSRVLGE PPFLDDKKEA DHWVAENTGA NMHSSQSIGT DIWSDEGKMS  540
PDWNYRLGPS SHIEEYGQNR HGITQGGTYL ATSEHDRVQV APGHGLYQNA QSVDGLSQVI  600
SRSPPTQDKH GIMQGGACVA TSEHDRVQVT PGQGFNQNVH SVNSLHSSSG HAVGQSQVTV  660
PILPSRGVDG THNREVSTEI MDASLSQVIS RNPPTQNKHG ITQGGAYLAT SEYDRVEVAP  720
GQGFNQNAQS VNPLHSSSGH ADGQSQVTVP ILPSIGVVGG THNQEISTEK NCTVESSTMN  780
ASLSQVISRN PPTQNKNGIT QGGTYFATSE HDRVQVAPGQ GFNQNSLHSS SGYTIGQSQV  840
AVPILPSRGG ILDGTHNHEV STEKKYLAEP SIMDGGLSQV ISTPTQNMVS KEQIAQLTNL  900
SASLAHILGT GQQLPQLYAA LNSHDLKDTP SLAKTEVPSM PVSNTSINPD PAVGLPQQYD  960
PTSDSIEPNA DAKKVSAAIP ATKRIAEPAA EIPSQLPDSG RQSRGDSIKP ASSELVKSDK  1020
IIQLQPGKNF DVNKDKSGVL AAERRRNSRD AHKNTKEDGP LDNMDQPGGP DEAKKTKDVK  1080
ELRAFKFSLA DLVKELLKPA WKEGQVNKED FKTIVKKVVE KVSGTMQGSQ IPQTKEKIDQ  1140
YLSVSRTKLT KLVQAYVEKV QKA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1301650.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143916	0.0	BT143916.1 Lotus japonicus clone JCVI-FLLj-24I8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020203619.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBL	A0A371GLE0	0.0	A0A371GLE0_MUCPR; Zinc finger CCCH domain-containing protein 38 (Fragment)
STRING	XP_007137708.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4099	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-17	C3H family protein