PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1301650.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 652aa    MW: 73075.3 Da    PI: 9.1602
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1301650.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-07212232526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +Cr+fa  GtC++G+ C+F H 
  Lj1g3v1301650.2 212 PCRDFAS-GTCRRGSLCNFLHH 232
                      8******.*************6 PP
2zf-CCCH19.51.7e-06271292426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C +fa+ G C+ G++CkF H 
  Lj1g3v1301650.2 271 EACINFAK-GRCRQGSSCKFVHH 292
                      68******.*************5 PP
3zf-CCCH185.2e-06367387526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ffa  G C+ G  C+F+H+
  Lj1g3v1301650.2 367 PCKFFAN-GNCRNGKYCRFSHD 387
                      7**8888.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.314207234IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4209233IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5211232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5211233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54267294IPR000571Zinc finger, CCCH-type
SMARTSM003560.11268293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4271292IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4362388IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366362389IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6365387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4367392IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MSEGGRKRSS KWDLIDEPEF APGSKQMRSG RSSADVAGSN SSKWSYSEGN DELKPGKGRS  60
SKDSFSGGRD SNKDNIMNKD YRVSDATMDL DTDRSYSKNM SPLLEERKQK RRSQSPKIGW  120
GSSLRDSNKD DIMNKDYGVW DATMDLDTDR SYSKNMSPLF EERRQNRRSQ SPKSGWGRSV  180
RRSRSRSPPH GFRRDSGIND RIRTRVGGSS QPCRDFASGT CRRGSLCNFL HHDNQNPENS  240
WESKHREDGA PRYSDTHESR DHSFRSGRAN EACINFAKGR CRQGSSCKFV HHNNSDGYGK  300
VSGDELTREK EIDKRRGDSS FEQGGRHGYG KVSVDELTRE KEIDKRRGDS SFEQGGRHGP  360
NRSSDIPCKF FANGNCRNGK YCRFSHDRQA CRSPDRRSRD DRWASNPSGD HQMFDRPKMS  420
DTASPNRRLR DDRWGSDGNT ADADKVRDSL KRNDAVATSD RAKLIEHKTG NVGVTDPKFT  480
DWPTGDAWGH SLDKSRVLGE PPFLDDKKEA DHWVAENTGA NMHSSQSIGT DIWSDEGKMS  540
PDWNYRLGPS SHIEEYGQNR HGITQGGTYL ATSEHDRVQV APGHGLYQNA QSVDGLSQVI  600
SRSPPTQDKH GIMQGGACVA TSEHDRVQVT PGQGFNQNVH SVNSLHSSSG HA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1301650.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1439160.0BT143916.1 Lotus japonicus clone JCVI-FLLj-24I8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203619.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A151R8H30.0A0A151R8H3_CAJCA; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A371GLE00.0A0A371GLE0_MUCPR; Zinc finger CCCH domain-containing protein 38 (Fragment)
STRINGXP_007137708.10.0(Phaseolus vulgaris)