PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1220240.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 187aa    MW: 21175.2 Da    PI: 5.9388
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1220240.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.23.5e-28109167159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDgy+WrKYG+K+vk++++ r+YY+C+ +gC+vkk+ver+++d ++v +tY g Hnhe
  Lj1g3v1220240.1 109 MDDGYKWRKYGKKSVKNNPNLRNYYKCSGEGCSVKKRVERDRDDSSYVLTTYDGIHNHE 167
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3096169IPR003657WRKY domain
SuperFamilySSF1182907.59E-26101169IPR003657WRKY domain
PROSITE profilePS5081129.321104169IPR003657WRKY domain
SMARTSM007745.2E-31109168IPR003657WRKY domain
PfamPF031064.4E-22110167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDYFLGNPNP NPAVNMAPFF SSDFEISDFL ALDDVVDHHP ESWSQSTETE SSEKAAASSD  60
ASHGFGDATS TNNNITFDRK CESGVKRNKV EDQVSPRVTF RTRSQLEIMD DGYKWRKYGK  120
KSVKNNPNLR NYYKCSGEGC SVKKRVERDR DDSSYVLTTY DGIHNHESPC TSYYGQMSLV  180
HSNVWAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-23100169877Probable WRKY transcription factor 4
2lex_A9e-23100169877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.180790.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1220240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1462170.0BT146217.1 Lotus japonicus clone JCVI-FLLj-3B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336932.12e-87probable WRKY transcription factor 50
TrEMBLI3T0G91e-139I3T0G9_LOTJA; Uncharacterized protein
STRINGGLYMA06G15220.12e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-43WRKY DNA-binding protein 51