PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1037350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 28008 Da PI: 4.9661 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7e-20 | 39 | 91 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le Fe+++++ +++ +LAk lgL+ rqV +WFqNrRa++k Lj1g3v1037350.1 39 KRRFSDEQIRSLECIFESESKLEPRKKIQLAKDLGLQPRQVAIWFQNRRARWK 91 568*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.5 | 8.7e-39 | 37 | 129 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+s+eq+++LE Fe+e+kLep++K +la++Lglqprqva+WFqnrRAR+k+k++Ek+y++Lk++yd+l+++ e+L++e+e+L+ el++ Lj1g3v1037350.1 37 ENKRRFSDEQIRSLECIFESESKLEPRKKIQLAKDLGLQPRQVAIWFQNRRARWKSKRMEKEYRKLKDEYDNLASRFESLKEEKESLQLELQK 129 58**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-18 | 21 | 93 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-19 | 22 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.9E-16 | 30 | 97 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.589 | 33 | 93 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.9E-17 | 39 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-14 | 39 | 94 | No hit | No description |
PRINTS | PR00031 | 1.1E-5 | 64 | 73 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 73 | 89 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.0E-11 | 93 | 133 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MMEEDENIQA SIGENVESFT CSLEPPQNSR KKNRKVENKR RFSDEQIRSL ECIFESESKL 60 EPRKKIQLAK DLGLQPRQVA IWFQNRRARW KSKRMEKEYR KLKDEYDNLA SRFESLKEEK 120 ESLQLELQKL SYLMETSHDG GKVGKENSTE DGGSGSGYSN CRGEGKVRFS NEGLEDRVGV 180 YSDDQNEISK RAEKPDQLLR MDDDHDAETP FTSLEKWYRV DPSGILDQAC NSSQWLDFWT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1037350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT135028 | 0.0 | BT135028.1 Lotus japonicus clone JCVI-FLLj-7F24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027902455.1 | 1e-117 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A2K3N846 | 1e-121 | A0A2K3N846_TRIPR; Homeobox-leucine zipper protein ATHB-7-like | ||||
STRING | XP_007136490.1 | 1e-115 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 2e-38 | homeobox 7 |