PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1020040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24865.4 Da PI: 9.1139 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.1 | 7.2e-21 | 18 | 65 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ks qvtfskRr g++KKA+EL++LC++e+a+++fs+ +k + + Lj1g3v1020040.1 18 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSF 65 57789999*********************************9987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.4E-29 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.17 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-26 | 10 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.37E-32 | 10 | 79 | No hit | No description |
PRINTS | PR00404 | 6.9E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-23 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MMSKKKSSLG RQKIPIEKIP KKSHLQVTFS KRRSGLFKKA SELCTLCGVE IAIVVFSPAD 60 KAFSFGHPEV ESIIDRYLTR NPPQEPSGAH QFVEAHRNAN LRDLNMQLTQ FLNHLEIEKK 120 QGDEIDNVRR ERQRQFWWES PVDELGLHEL IQLKGSVEEL KDNLGKLATK FIMEQCNSNI 180 SSVNIGASGL GLYDASFENK YGATIPNAYN YLGFRQGNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-17 | 9 | 95 | 1 | 87 | MEF2C |
5f28_B | 3e-17 | 9 | 95 | 1 | 87 | MEF2C |
5f28_C | 3e-17 | 9 | 95 | 1 | 87 | MEF2C |
5f28_D | 3e-17 | 9 | 95 | 1 | 87 | MEF2C |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1020040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511261.1 | 1e-124 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q9FKK2 | 5e-54 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S2YWY3 | 1e-123 | A0A1S2YWY3_CICAR; agamous-like MADS-box protein AGL61 | ||||
STRING | XP_004511261.1 | 1e-123 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-56 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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