PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0491080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 83aa    MW: 9197.46 Da    PI: 8.6129
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0491080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.21.5e-312074260
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                     +++rY eC+kNhAas+Gg+avDGC+Efm+s g+    +al+CaACgCHRnFHRrev++e
  Lj1g3v0491080.1 20 RNIRYGECQKNHAASIGGYAVDGCREFMASAGD----EALTCAACGCHRNFHRREVQTE 74
                     579***************************665....5*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-26183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.9E-272271IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.9E-262371IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.6592470IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MKKRQVVVKK LSNTTSSVMR NIRYGECQKN HAASIGGYAV DGCREFMASA GDEALTCAAC  60
GCHRNFHRRE VQTEVVCEYS PPN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots, stems and flowers, present in seedlings and leaves, and weakly observed in inflorescence and siliques. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:18713354}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0491080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1393941e-139BT139394.1 Lotus japonicus clone JCVI-FLLj-11N11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522326.11e-48mini zinc finger protein 3
RefseqXP_014632621.11e-48mini zinc finger protein 3
RefseqXP_028229098.11e-48mini zinc finger protein 3-like
RefseqXP_028237252.11e-48mini zinc finger protein 3-like
SwissprotQ2Q4935e-43MIF3_ARATH; Mini zinc finger protein 3
TrEMBLI3SFZ71e-55I3SFZ7_LOTJA; Uncharacterized protein
STRINGGLYMA04G33640.14e-48(Glycine max)
STRINGGLYMA06G20810.14e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.12e-45mini zinc finger