PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v0465620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 524aa MW: 57176.2 Da PI: 7.0236 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.3e-30 | 245 | 304 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+ Lj1g3v0465620.1 245 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAQDMSILITTYEGNHNHP 304 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-31 | 230 | 306 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-27 | 238 | 306 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.357 | 240 | 306 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-36 | 245 | 305 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-26 | 246 | 304 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MEFGSGRSGH DEGEGAKVER RSQSSGGGGG GEDHREQETV VTQEPPMTDI ARSMEGAGPN 60 TSSPKKEEVD ELENTKAEMG GVIQENQRLK TCLNRILNDY RTLQMQFHNI AEQDTKTSSD 120 KANNNNHNQD KMMEESELVS LSLGRLPSNP RNNEKAKVIS RPLKEEENRE GLALGLDCKF 180 ETSKSGSTDN SSELPLKEDV GETWKPSKVD KTSITIPGED EVSQQNNPAK KTRVCVRARC 240 DTLTMNDGCQ WRKYGQKISK GNPCPRAYYR CTVAPSCPVR KQVQRCAQDM SILITTYEGN 300 HNHPLPLSAT AMASTTSAAA SMLLSGSSTS HAGSTTADLH GMNFCLSDGS KSKQFYMSHP 360 ALSPSPSHPT ITLDLTTSNN NLPLSSLPFG RFTSNFNNPP RYPSSTSLNF SNSESNAMSW 420 SNGFLSYNTS LPYNNNNILS NPGRQQQQQP MENNILNSYM QRNNNNVPTD TIAEATKAIT 480 ADPTFQSALA AALTSIIGST GSSTTTQGLN QNNVGEILGK KRKW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 232 | 306 | 1 | 74 | WRKY transcription factor 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v0465620.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004950 | 0.0 | AP004950.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT42E10, TM0123, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528183.1 | 0.0 | probable WRKY transcription factor 61 | ||||
Refseq | XP_028237211.1 | 0.0 | probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 1e-117 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A371I8J3 | 0.0 | A0A371I8J3_MUCPR; Putative WRKY transcription factor 72 (Fragment) | ||||
STRING | GLYMA06G20300.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 5e-68 | WRKY DNA-binding protein 72 |
Publications ? help Back to Top | |||
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