PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v0244390.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

ZF-HD

Protein Properties

Length: 270aa MW: 29624.1 Da PI: 7.2582

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v0244390.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	96	2.9e-30	61	117	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eC+kNhA+s GghavDGC+Efm++ g+egt +a+ CaAC+CHRnFHR+e + e Lj1g3v0244390.1 61 VVRYRECQKNHAVSFGGHAVDGCCEFMAA-GDEGTLEAVICAACNCHRNFHRKEIDGE 117 689***********************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-20	60	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.7E-28	62	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.0E-26	63	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.821	64	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	9.24E-20	192	268	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-30	195	269	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.7E-24	207	264	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEFDEQEEQD EEMGIPESPP PVPASYDPLL NSAPRSKIAE VSAPVIGRKG GSFTPPVAAG 60 VVRYRECQKN HAVSFGGHAV DGCCEFMAAG DEGTLEAVIC AACNCHRNFH RKEIDGETVA 120 SCQRQQPPPP PVHHHQYHSQ FSPYYHRGPQ HHAASGGYLH HHLTTSPTAP HRPLALPPAT 180 SGGGFSREEE DMSNPSSSGG GGGGGMKKRY RTKFTPEQKE KMLAFAEELG WRIQKHQEAA 240 VEQFCAETCV RRNVLKVWMH NNKNTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-29	208	265	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5178	0.0	floral bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v0244390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004968	0.0	AP004968.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43O24, TM0145, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003615230.1	1e-116	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	7e-69	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	G7KBF3	1e-115	G7KBF3_MEDTR; Homeobox domain, ZF-HD class protein
STRING	XP_004490406.1	1e-116	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-66	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]