PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0162600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GATA
Protein Properties Length: 319aa    MW: 34238.6 Da    PI: 5.5804
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0162600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.5e-17231266134
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g
  Lj1g3v0162600.1 231 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRG 266
                      ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.7E-994129IPR010399Tify domain
PROSITE profilePS5132013.61794129IPR010399Tify domain
PfamPF062005.9E-1298128IPR010399Tify domain
PfamPF062036.2E-15163205IPR010402CCT domain
PROSITE profilePS5101712.104163205IPR010402CCT domain
PROSITE profilePS5011411.332225284IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-15225278IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-12227279No hitNo description
Gene3DG3DSA:3.30.50.104.4E-16229272IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.94E-15230276No hitNo description
PROSITE patternPS003440231258IPR000679Zinc finger, GATA-type
PfamPF003205.4E-15231266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNFPCNGSEP PGSTMEPPMY GHSQPMNMPG QIAAGDSDEA SGADHAIDAN HHIQYESNPL  60
EDGSGVAVED VTSDAVYVSG HAGGGSDYSS LVPHCDDSSQ LTLSFRGQVY VFDSVTTDKV  120
QAVLLLLGGC ELPQAGTPCV DTAAQQNQRG SMEYPARCSL PQRAASLNRF RQKRKERCYD  180
KKVRYGVRQE VALRMHRNKG QFTSSKKQDG ANGSGTDQES GQDDSQAETS CTHCGTSSKS  240
TPMMRRGPSG PRSLCNACGL FWANRGALRD LSKRNQEHSL VQVEQVDGGN SADCRTAMPA  300
LNNVVAFSEN DDPALVADR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0162600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064030.0AP006403.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT16P18, TM0289, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329890.11e-171GATA transcription factor 25 isoform X1
SwissprotQ9LRH62e-93GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S3VVL01e-169A0A1S3VVL0_VIGRR; GATA transcription factor 25 isoform X1
STRINGXP_007141281.11e-166(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-94GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]