PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v0130130.1 | ||||||||
Common Name | MYB103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 30379 Da PI: 6.5101 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ lvd+++++G g+W++ ++ g++R++k+c++rw +yl Lj1g3v0130130.1 14 KGPWSQEEDKVLVDYIQKHGHGSWRALPQLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++l++++++ lG++ W+tIa++++ gRt++++k+ w+++l Lj1g3v0130130.1 67 RGKFSDEEEQLIINLHASLGNK-WATIASHLP-GRTDNEIKNLWNTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.769 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.23E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.13E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.887 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-27 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.13E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MMRTPSIDES GMKKGPWSQE EDKVLVDYIQ KHGHGSWRAL PQLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SDEEEQLIIN LHASLGNKWA TIASHLPGRT DNEIKNLWNT HLKKKLLQMG 120 LDPVTHYATN RAKLHLLQNM LQNNNFQNIY NGSVAFPSLH QIQPSFQNFE APQHLSGGRD 180 DISNYRECLK FDEQLGLSNI ADPTPSNSLP KLVSASPECS PVNQEENMAN HKEWSNFDPS 240 STAFETWGEF MSEDTSETYW KDFME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-28 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v0130130.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB108650 | 0.0 | AB108650.1 Lotus japonicus MYB103 gene for transcription factor MYB103, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027362554.1 | 1e-124 | transcription factor MYB53-like | ||||
Swissprot | Q9SBF3 | 4e-71 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | Q84PP3 | 0.0 | Q84PP3_LOTJA; Transcription factor MYB103 | ||||
STRING | XP_007131513.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 2e-74 | myb domain protein 107 |
Publications ? help Back to Top | |||
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