PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0128860.1
Common NameMYB103
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 304aa    MW: 34546.8 Da    PI: 6.3151
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0128860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+ lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Lj1g3v0128860.1 13 KGPWSQEEDKVLVDYIQKHGHGSWRALPQLAGLNRCGKSCRLRWTNYL 60
                     79********************************************97 PP
2Myb_DNA-binding54.13.6e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++l++++++ lG++ W+tIa++++ gRt++++k+ w+++l
  Lj1g3v0128860.1  66 RGKFSDEEEQLIINLHASLGNK-WATIASHLP-GRTDNEIKNLWNTHL 111
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.769860IPR017930Myb domain
SuperFamilySSF466892.98E-3110107IPR009057Homeodomain-like
SMARTSM007174.2E-141262IPR001005SANT/Myb domain
PfamPF002491.2E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-241467IPR009057Homeodomain-like
CDDcd001671.16E-101560No hitNo description
PROSITE profilePS5129426.88761115IPR017930Myb domain
SMARTSM007174.3E-1565113IPR001005SANT/Myb domain
PfamPF002491.3E-1566111IPR001005SANT/Myb domain
CDDcd001673.26E-1168111No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2768115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRTPSIDESG MKKGPWSQEE DKVLVDYIQK HGHGSWRALP QLAGLNRCGK SCRLRWTNYL  60
RPDIKRGKFS DEEEQLIINL HASLGNKWAT IASHLPGRTD NEIKNLWNTH LKKKLLQMGL  120
DPVTHCPRSD HMNILSNLQQ ILAAANIVSS FTNPCDMIHA LMLHSDATNL AKLHLLQNML  180
QNNNFQNIYN GSVAFPSLHQ IQPSFQNFEA PQHLSGGRDD ISNYRECLKF DEQLGLSNIA  240
DPTPSNSLPK LVSASPECSP VNQEENMANH KEWSNFDPSS TAFETWGEFM SEDTSETYWK  300
DFME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0128860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1086500.0AB108650.1 Lotus japonicus MYB103 gene for transcription factor MYB103, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362554.11e-150transcription factor MYB53-like
SwissprotQ9SBF39e-79MYB92_ARATH; Transcription factor MYB92
TrEMBLQ84PP30.0Q84PP3_LOTJA; Transcription factor MYB103
STRINGGLYMA01G44370.21e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-86myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]