PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v0114040.1

Common Name

CPP-L56

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

CPP

Protein Properties

Length: 766aa MW: 84036.6 Da PI: 5.9253

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v0114040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.9e-16	477	514	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Lj1g3v0114040.1 477 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 514 89**********************************96 PP
2	TCR	51	2.9e-16	561	599	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Lj1g3v0114040.1 561 RHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNA 599 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-18	475	516	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.188	476	601	IPR005172	CRC domain
Pfam	PF03638	1.1E-11	478	513	IPR005172	CRC domain
SMART	SM01114	5.6E-17	561	602	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-11	563	599	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MDMDTPERNR LNTPVSKFED SPVFNYINNL SPIKTVKSVH ITQTFNSLSF SSPPSVFTSP 60 HVSCLKESRF VSRHNQFGTS KPKVSSEDVN KVHSSEEALA IHGDHDSNEP QENADRGISV 120 EDASIELSGE HTKFSVELPQ ALQYNCGSTS YDPPLRDDEA NTLLELPGEA APEVAYVQQI 180 VSIEHEVHIQ EMCQVEENGE GADCDWDSLL PNATDLLLFN SPNQAETFKN LMQKPLRSSM 240 RLGDVMSLLP QSTLSNDQNI HTVDSVVPGA EHEIEANCSE TVAINSTEPS QDTLADVDLS 300 TSNPNEKMDD KVVSVTHRGT RRRCLDFEMA SVRTKNSDGN SNASSSTTQS EVRIAANEKQ 360 LLPIKRDANS QRRMLPGIGL HLNALATFTD YKGIQQSEKF SSSGRQLSLA SSSSLQLSAS 420 LEHQNLVPVT AERELDPSEN GVQPAEDSSQ AASEDFNQNS PKKKRRKVEP AGDTEGCKRC 480 NCKKSKCLKL YCECFAAGVY CIEPCSCQDC FNKPIHEDTV LQTRKQIESR NPLAFAPKVI 540 RNSDSVPEIG DDPNKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIS CRCEGCKNAF 600 GRKDGSAQAE PEEETETSNK GVMEKALQKT EIQNIEEHQD SSVAATPLRL SRPLLPLPFS 660 SKGKPPRSFV TTISGSALFT SQKLGKPNSL WSQANKHFQG VVPEDDEMPD ILHGDSSPIA 720 CIKSSSPNSK RISSPNCEMR SSPSRRGGRK LILQSIPSFP SLTTHP

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MDMDTPERNR LNTPVSKFED SPVFNYINNL SPIKTVKSVH ITQTFNSLSF SSPPSVFTSP  60
HVSCLKESRF VSRHNQFGTS KPKVSSEDVN KVHSSEEALA IHGDHDSNEP QENADRGISV  120
EDASIELSGE HTKFSVELPQ ALQYNCGSTS YDPPLRDDEA NTLLELPGEA APEVAYVQQI  180
VSIEHEVHIQ EMCQVEENGE GADCDWDSLL PNATDLLLFN SPNQAETFKN LMQKPLRSSM  240
RLGDVMSLLP QSTLSNDQNI HTVDSVVPGA EHEIEANCSE TVAINSTEPS QDTLADVDLS  300
TSNPNEKMDD KVVSVTHRGT RRRCLDFEMA SVRTKNSDGN SNASSSTTQS EVRIAANEKQ  360
LLPIKRDANS QRRMLPGIGL HLNALATFTD YKGIQQSEKF SSSGRQLSLA SSSSLQLSAS  420
LEHQNLVPVT AERELDPSEN GVQPAEDSSQ AASEDFNQNS PKKKRRKVEP AGDTEGCKRC  480
NCKKSKCLKL YCECFAAGVY CIEPCSCQDC FNKPIHEDTV LQTRKQIESR NPLAFAPKVI  540
RNSDSVPEIG DDPNKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIS CRCEGCKNAF  600
GRKDGSAQAE PEEETETSNK GVMEKALQKT EIQNIEEHQD SSVAATPLRL SRPLLPLPFS  660
SKGKPPRSFV TTISGSALFT SQKLGKPNSL WSQANKHFQG VVPEDDEMPD ILHGDSSPIA  720
CIKSSSPNSK RISSPNCEMR SSPSRRGGRK LILQSIPSFP SLTTHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-17	480	598	14	120	Protein lin-54 homolog
5fd3_B	3e-17	480	598	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	461	465	KKKRR
2	461	466	KKKRRK
3	462	466	KKRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.15905	0.0	cell culture\| floral bud

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v0114040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB378645	0.0	AB378645.1 Lotus japonicus CPP-L56 mRNA for transcription factor CPP, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361304.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	B3IX45	0.0	B3IX45_LOTJA; Transcription factor CPP
STRING	GLYMA01G44670.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2619	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-131	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus. Plant Physiol., 2008. 147(4): p. 2030-40 [PMID:18567832]