PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v0101540.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 370aa MW: 41522.1 Da PI: 7.7418

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v0101540.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	145.8	3e-45	111	256	1	135
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg. 88 a++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ ai+el+++ ss+s+++ +++++ + Lj1g3v0101540.1 111 ATTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQELARSkncscSSNSNNNPSNNNK---------Sl 195 579************************************************************555441112211112222.........13 PP TCP 89 ..............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 + +s+ k +++++ ++l+ +kesr++arararert km +++ Lj1g3v0101540.1 196 fgggdnhngtnsirGRGNSKLKWTTQRDQDVCVLQNKKESRERARARARERTFYKMLEDQR 256 3334444456777577777779********************************88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-40	112	251	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.612	114	172	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.457	233	250	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MFSSTSYHDS INPFPSSFPS SSYPSLPFLI DPENINNFPQ DPLVSHPFIH DSNINDAPIF 60 THDTTNLAVS VSHLLEQQDP LGGNNYASSI VPNFLRASKP AASASAAAAM ATTKKDRHSK 120 IHTSQGLRDR RVRLSSEIAR KFFDLQDMLE FDKPSNTLEW LFTKSESAIQ ELARSKNCSC 180 SSNSNNNPSN NNKSLFGGGD NHNGTNSIRG RGNSKLKWTT QRDQDVCVLQ NKKESRERAR 240 ARARERTFYK MLEDQRLPAN TTQIMHQLRS SSPIQLLQPY PHLMDNSEAV SGGGGGDGFN 300 VIEESIMIKR NMMSSNSHPH ENHHLAIPNK EAGFNNNYID YPLLQPYSTT PNWEIATMNM 360 NLSTCFMNQW

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MFSSTSYHDS INPFPSSFPS SSYPSLPFLI DPENINNFPQ DPLVSHPFIH DSNINDAPIF  60
THDTTNLAVS VSHLLEQQDP LGGNNYASSI VPNFLRASKP AASASAAAAM ATTKKDRHSK  120
IHTSQGLRDR RVRLSSEIAR KFFDLQDMLE FDKPSNTLEW LFTKSESAIQ ELARSKNCSC  180
SSNSNNNPSN NNKSLFGGGD NHNGTNSIRG RGNSKLKWTT QRDQDVCVLQ NKKESRERAR  240
ARARERTFYK MLEDQRLPAN TTQIMHQLRS SSPIQLLQPY PHLMDNSEAV SGGGGGDGFN  300
VIEESIMIKR NMMSSNSHPH ENHHLAIPNK EAGFNNNYID YPLLQPYSTT PNWEIATMNM  360
NLSTCFMNQW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	245	RERARARARER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v0101540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010441	0.0	AP010441.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT32M13, TM1651, complete sequence.
GenBank	DQ202477	0.0	DQ202477.1 Lotus corniculatus var. japonicus CYC3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028220452.1	2e-89	transcription factor DICHOTOMA-like
Refseq	XP_029128870.1	2e-89	transcription factor DICHOTOMA isoform X2
TrEMBL	Q1WK56	0.0	Q1WK56_LOTJA; CYC3
STRING	GLYMA20G28670.1	5e-90	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	4e-23	TCP family protein

Publications ? help Back to Top
Feng X, et al. Control of petal shape and floral zygomorphy in Lotus japonicus. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(13): p. 4970-5 [PMID:16549774]