PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0363549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 189aa MW: 22613.9 Da PI: 10.6571 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67 | 4.9e-21 | 28 | 117 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn YA+ GFs rk+k + +n++i++++fvC k+g+r++ + ++++r++ + r+gC+a+ +v+ + +++w+v+ ++ eHnH l+ Lj0g3v0363549.1 28 FYNMYARVKGFSARKDKLLRD-KNRQIIQQNFVCHKQGRRTNIFGDeRTRKREPMKDIRCGCRAECRVHIDCnSNRWYVKYFDDEHNHLLV 117 9*****************999.6666**************9975553678899999************999889**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-19 | 28 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGNVNFKILN GNNLKMYRFS SREVAFLFYN MYARVKGFSA RKDKLLRDKN RQIIQQNFVC 60 HKQGRRTNIF GDERTRKREP MKDIRCGCRA ECRVHIDCNS NRWYVKYFDD EHNHLLVRAN 120 HAGLLPRHRR MQDADIMHMN HMRRAQNGIR NIYGSFANQM GGYENVPFSI HAMYNEVDKQ 180 RKKELPDGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0363549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-17 | FAR1-related sequence 5 |