PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0361449.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C3H

Protein Properties

Length: 322aa MW: 34331.8 Da PI: 9.6088

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0361449.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.9e-06	16	36	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f +G C++Gd+C F+H Lj0g3v0361449.1 16 PCNNFVSSGSCWRGDTCMFSH 36 7*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	26	No hit	No description
PROSITE profile	PS50103	12.089	11	39	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	15	38	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	16	37	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-4	16	36	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MKGDDCPYDH ELSKYPCNNF VSSGSCWRGD TCMFSHQVPA NQDIPTPSNV CKPQAASPLN 60 NHGFKSIQQN HLKGISSLIK PDHNMVADTS QKQPTPAPKG IRFINAAKLS PSPSTLKQGM 120 LTPNTESLVQ HGTLADRSAS GTSTTQSIVE ISKKLPAVAP KGINFLSFGK GPVCSFKSSM 180 SFHVNRENGI KLPQVVNFGL PHQASLSINK DGSDKVSDGT KNVPQTNLAS NEILNKVLSV 240 AEEMKSKFPG KASKDDSAKD NSRSKSVQEG KKASNNCSEC LVSGYHKLAS GSSKNALSST 300 LAFAVEHESD IKMKLMVGGS SV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0361449.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513883.1	1e-117	uncharacterized protein LOC101495956 isoform X1
Refseq	XP_027186104.1	1e-117	uncharacterized protein LOC101495956 isoform X5
Refseq	XP_027186105.1	1e-117	uncharacterized protein LOC101495956 isoform X6
TrEMBL	A0A1S2Z2K0	1e-116	A0A1S2Z2K0_CICAR; uncharacterized protein LOC101495956 isoform X1
TrEMBL	A0A3Q7WWM8	1e-116	A0A3Q7WWM8_CICAR; uncharacterized protein LOC101495956 isoform X5
TrEMBL	A0A3Q7YAY9	1e-116	A0A3Q7YAY9_CICAR; uncharacterized protein LOC101495956 isoform X6
STRING	XP_004513883.1	1e-116	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6650	23	23