PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0360389.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 617aa    MW: 68216.4 Da    PI: 6.9534
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0360389.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.5e-21123178156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Lj0g3v0360389.2 123 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 178
                      688999***********************************************999 PP
2START200.48e-633205441206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela++a++el+k+a+ +ep+W++ +    e++n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    + +t
  Lj0g3v0360389.2 320 ELALAAMDELMKMAQTGEPLWMRNVevgrEILNHEEYMRTFTPCIGirpngFVSEASRETGMVIINSLALVETLMDAN-RWAEMFPcmiaRTAT 412
                      5899**************************************99989*******************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                       ev+ssg      galqlm  el +lsplvp R++ f+R+++q+++g+w++vd S+d  ++ +  +s+  +++lpSg+++++++ng+skvtwve
  Lj0g3v0360389.2 413 NEVVSSGingtrnGALQLMHGELHVLSPLVPvREVNFLRFCKQHREGVWAVVDLSIDTIREGSGVPSFGNCRRLPSGCVVQDMPNGYSKVTWVE 506
                      **************************************************************99****************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      h++++++++h+l+r+l++sg+ +ga++w atlqrqce+
  Lj0g3v0360389.2 507 HAEYDESQVHQLYRPLLSSGMGFGAQRWIATLQRQCEC 544
                      ************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-21103180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-22108180IPR009057Homeodomain-like
PROSITE profilePS5007117.362120180IPR001356Homeobox domain
SMARTSM003894.7E-17121184IPR001356Homeobox domain
CDDcd000861.03E-17123180No hitNo description
PfamPF000461.5E-18123178IPR001356Homeobox domain
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PROSITE profilePS5084842.319311547IPR002913START domain
SuperFamilySSF559612.61E-31313544No hitNo description
CDDcd088752.33E-125315543No hitNo description
SMARTSM002341.7E-45320544IPR002913START domain
PfamPF018521.1E-54320544IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MSFGGFLDSN NSGGGGGGGR NIAADVPYSN GNTTNDRMAF GAISQPRLVT TTPSLAKPMF  60
TSPGLSLALQ SNIDGQEDVN RMCEPNGLKR SREEEQSRSG SDNMDGGASC DEQDAADNPP  120
NKKKRYHRHT PQQIQELEAL FKECPHPDEK QRLELSRRLC LETRQVKFWF QNRRTQMKTQ  180
LERHENTLLR QENDKLRGEN MSIRDAMRNP ICSNCGGPAM IGEISIEEQH LRIENARLKD  240
ELDRVCALAG KFLGRPISSL PNSSLELGVG GNNGFGGMNT MPDFGMANSL AMVSPSIRPS  300
PTGVTSGFVD RSIERSMIVE LALAAMDELM KMAQTGEPLW MRNVEVGREI LNHEEYMRTF  360
TPCIGIRPNG FVSEASRETG MVIINSLALV ETLMDANRWA EMFPCMIART ATNEVVSSGI  420
NGTRNGALQL MHGELHVLSP LVPVREVNFL RFCKQHREGV WAVVDLSIDT IREGSGVPSF  480
GNCRRLPSGC VVQDMPNGYS KVTWVEHAEY DESQVHQLYR PLLSSGMGFG AQRWIATLQR  540
QCECLAILMS SAPPSIRDHS APITAGGKRS MLKLAQRMTN NFCAGVCAST VHKWNKLNPG  600
NVEENVRVMT RQSIDDP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.101060.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0360389.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027334621.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLV7ANR50.0V7ANR5_PHAVU; Uncharacterized protein
STRINGXP_007134961.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]