PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0357379.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WRKY

Protein Properties

Length: 330aa MW: 36448 Da PI: 6.7006

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0357379.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.1	7.6e-33	162	220	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt a+C vkk+vers++dp+vv++tYeg+H h+ Lj0g3v0357379.1 162 LDDGYRWRKYGQKAVKNSPYPRSYYRCTAASCGVKKRVERSSHDPSVVVTTYEGQHIHP 220 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.5E-34	147	222	IPR003657	WRKY domain
SuperFamily	SSF118290	1.09E-28	154	222	IPR003657	WRKY domain
PROSITE profile	PS50811	32.42	157	222	IPR003657	WRKY domain
SMART	SM00774	5.8E-38	162	221	IPR003657	WRKY domain
Pfam	PF03106	3.7E-26	163	220	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MSTTTTSSFL FQPSPVSTIF DHPMPSSCHQ KDSSSFMDLL AFNDDYNNSV LDWLPITGDP 60 VNLNHPLPSP SSEVLNTPAS PNNSCSISSS SNEGSAKVQQ STEPKTELEE EDNNGNGDGG 120 RGDDPAEQDK TKKQLKTKKK KNVKKEREAR FAFMTKSEVD QLDDGYRWRK YGQKAVKNSP 180 YPRSYYRCTA ASCGVKKRVE RSSHDPSVVV TTYEGQHIHP CPTTTRSTLA SFMHNNEPSF 240 GFANVSASQY SSQHSFALPH ASSTSATMLY NSSTTPLSTT SSFGGFVHQD HAGNHYHQQE 300 AMLRDNGLLQ DIILPSNIMS NIQDNKDSFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-29	152	222	7	77	Probable WRKY transcription factor 4
2lex_A	3e-29	152	222	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.9887	0.0	cell culture\| pod\| protoplast\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0357379.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT134515	0.0	BT134515.1 Lotus japonicus clone JCVI-FLLj-11J23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981424.1	1e-75	probable WRKY transcription factor 48 isoform X2
Swissprot	O22900	3e-49	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	I3S218	1e-129	I3S218_LOTJA; Uncharacterized protein
STRING	GLYMA15G14860.2	1e-74	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	5e-46	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]