PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0349359.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 351aa    MW: 37832.4 Da    PI: 5.8582
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0349359.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-173378147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
  Lj0g3v0349359.1 33 KGPWSPEEDAILSQLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 78
                     79******************************.***********985 PP
2Myb_DNA-binding55.99.9e-1885129147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd ++v a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Lj0g3v0349359.1  85 RKPFTDEEDRIIVAAHAIHGNK-WAAIAKILP-GRTDNAIKNHWNST 129
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.8412879IPR017930Myb domain
SuperFamilySSF466899.68E-3130126IPR009057Homeodomain-like
SMARTSM007172.6E-153281IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-263486IPR009057Homeodomain-like
CDDcd001671.11E-143577No hitNo description
PfamPF139218.2E-173693No hitNo description
PROSITE profilePS5129426.56280134IPR017930Myb domain
SMARTSM007173.1E-1784132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2487133IPR009057Homeodomain-like
CDDcd001672.45E-1387130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEPEEAADGS GDEGMPGLAE GGSSEGGCRD RVKGPWSPEE DAILSQLVSK FGARNWSLIA  60
RGIAGRSGKS CRLRWCNQLD PSVKRKPFTD EEDRIIVAAH AIHGNKWAAI AKILPGRTDN  120
AIKNHWNSTL RRRGVEHDKI KLESGNMVED LSLDKAKASS EETLSCGDVN SLKSSEGRDV  180
SSMEIIDDKC EDKAQTEVQL YHEVKDPPTL VRPVARVSAF SVYHSSNGLQ PSTSVQRPVP  240
MQGPMLQSSK PDFELCKMLE GIYGDQSVPC QCGHGCCAAP NGKNSKSSLL GPEFIEFSEP  300
PSFPSFELAA IAADISNLAW LKSGLESSNA KMVGDTTGRV LSNGSQVHSG H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-42271331107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0349359.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236498.10.0transcription factor MYB1
SwissprotQ425751e-112MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A0S3SWF30.0A0A0S3SWF3_PHAAN; Uncharacterized protein
TrEMBLA0A151RT460.0A0A151RT46_CAJCA; Transcription factor MYB44
STRINGGLYMA01G26650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-104myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]