PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0347519.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 675aa    MW: 76758.2 Da    PI: 5.641
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0347519.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.69.3e-1103016721373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+a+ss+d + a++lL+++++++sp g+ +qRla+yf +AL+arla+++s++y+ l++++ts    ++ + a++++s ++P+ k++
  Lj0g3v0347519.1 301 LRTLLMQCAQAISSDDISTAKSLLKQIKQHSSPMGNGTQRLAHYFGNALEARLAGTGSQIYRMLSSKRTS---AADMIRAYQVYSLACPFEKLA 391
                      6789************************************************************999999...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + aN+ I + ++  e++Hi+Df+i++G++Wpa+++ +++Rp+g+p+lRiTg++  ++g    ++++etg+rLa+++++++vpfefn+ +a+r+
  Lj0g3v0347519.1 392 IMFANNSIWNKAKDVETLHIVDFGIGYGFKWPAFIHRISKRPGGSPKLRITGIELLQPGfrPLQRVHETGKRLASYCNRFNVPFEFNA-IAQRW 484
                      *********************************************************99999**************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E laVn+ ++ ++llde+v  e++r +vL+l+k+ +P ++v+   +  +n++ F +rf ea+ +y+alfd l+++l+re+ 
  Lj0g3v0347519.1 485 ETIKVEDLKIKKNEFLAVNCLFRSEKLLDETVVEENPRGAVLDLIKKANPGIFVHGIVNGCYNAPFFSTRFREAVFHYTALFDVLDTNLAREDP 578
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r + E+e+ g+e++nvvaceg er+er et+++W+ r++++GF+ +pl++++ ++ +  lr  k +    ++ + +++++gWk+r L++ S+W
  Lj0g3v0347519.1 579 MRLMFEEEFCGKEVMNVVACEGCERIERPETYKQWQLRIMRSGFRHLPLDDQIINKLRGRLRDDKyNSDIILQVDGNWVLQGWKGRILYASSCW 672
                      *************************************************************9988788899*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.709275652IPR005202Transcription factor GRAS
PfamPF035143.2E-107301672IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MDDDRVVDPS HCAGKNSAYR DEGSCLGENE SESDQFSSTI LSYINQTLME EEDMEEKYSM  60
FQDSLALKHA EKSLYEAIGQ KYPSSPPPPP PPPTLDNYTT LESPDQSFSS NFSDYSFSSD  120
TSSGTTSGFE FESIECNSFT IPTTLPIPST THYSTNHTSY FTTNNTGLGL DSALLSKSYL  180
VQFERGVEQG TMFLPVQTPF ITYHDNTTLF PSFTNPAPHG VIKSESHEEE HFLGRRHRKQ  240
EDEDEDEAEE QHRRSTKRSE AYIDDTELSE LFDKLLVQGT RLGNNSSPYM RQGKTEEVVN  300
LRTLLMQCAQ AISSDDISTA KSLLKQIKQH SSPMGNGTQR LAHYFGNALE ARLAGTGSQI  360
YRMLSSKRTS AADMIRAYQV YSLACPFEKL AIMFANNSIW NKAKDVETLH IVDFGIGYGF  420
KWPAFIHRIS KRPGGSPKLR ITGIELLQPG FRPLQRVHET GKRLASYCNR FNVPFEFNAI  480
AQRWETIKVE DLKIKKNEFL AVNCLFRSEK LLDETVVEEN PRGAVLDLIK KANPGIFVHG  540
IVNGCYNAPF FSTRFREAVF HYTALFDVLD TNLAREDPMR LMFEEEFCGK EVMNVVACEG  600
CERIERPETY KQWQLRIMRS GFRHLPLDDQ IINKLRGRLR DDKYNSDIIL QVDGNWVLQG  660
WKGRILYASS CWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-532916748379Protein SCARECROW
5b3h_D1e-532916748379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252258RRSTKRS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0347519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019413917.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A4P1R0Y90.0A0A4P1R0Y9_LUPAN; Uncharacterized protein
STRINGXP_007132057.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]