PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0345959.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | B3 | ||||||||
Protein Properties | Length: 182aa MW: 20743.7 Da PI: 6.4997 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.4 | 3.9e-11 | 71 | 178 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS...-EEEEEE..........EEETTEEEE-TTH.HHHHHHHT--TT- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg...rsWevkliy........rkksgryvltkGW.keFvkangLkegD 78 +k+lt+sd + ++rl +pk+ ae+ ++ ++++++e+g W+v + +++sg+yv+ ++W k+Fvk gLk gD Lj0g3v0345959.1 71 KKKLTQSDLGYLSRLLIPKDLAEDLvlpvlT----RDAQMQVYTENGtkiLIWDVDTQSshylvfklWNSSGSYVFIDNWtKDFVKRRGLKKGD 160 699*******************999976441....44456666666666744555543334444555*************557*********** PP EEEEEE-SS.SEE..EEE CS B3 79 fvvFkldgr.sefelvvk 95 + ++ d + ++f++ v+ Lj0g3v0345959.1 161 EIKLHWDPNkNCFNFSVH 178 *****9866688877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.14E-16 | 66 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.26E-17 | 68 | 178 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-13 | 70 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.3E-8 | 72 | 178 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MACVPESICV HLTLGACPCA KSIIACSSNN PVEDDDSREK QQHRRAEEIS HAAAVVESPE 60 LMLCDDPWKI KKKLTQSDLG YLSRLLIPKD LAEDLVLPVL TRDAQMQVYT ENGTKILIWD 120 VDTQSSHYLV FKLWNSSGSY VFIDNWTKDF VKRRGLKKGD EIKLHWDPNK NCFNFSVHYS 180 SN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0345959.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020202397.1 | 6e-57 | B3 domain-containing protein At2g33720 | ||||
TrEMBL | A0A4P1RND5 | 2e-54 | A0A4P1RND5_LUPAN; Uncharacterized protein | ||||
STRING | XP_007138390.1 | 4e-40 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF579 | 12 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 3e-23 | B3 family protein |