PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0344779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 19712.6 Da PI: 8.6096 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Lj0g3v0344779.1 39 FECKTCNRQFSSFQALGGHRASH 61 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.51E-9 | 37 | 110 | No hit | No description |
Pfam | PF13912 | 1.2E-12 | 38 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.242 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-10 | 87 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.951 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKREREIDSM TMANCLMLLS QGGEFETTTT STYSPSRVFE CKTCNRQFSS FQALGGHRAS 60 HKKPRLMAGN GDMELLHGSS SPPKPKTHEC SICGLEFAIG QALGGHMRRH RAENLSGNMM 120 QSSTTMSCSS GGSSLDSSPK NVMKAYKKIV LALDLNLTPF ENDLEFLKIG KATGLVDYLH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0344779.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141485 | 0.0 | BT141485.1 Lotus japonicus clone JCVI-FLLj-24I3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027352863.1 | 2e-83 | zinc finger protein ZAT11-like | ||||
TrEMBL | I3SFV2 | 1e-130 | I3SFV2_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA18G52410.1 | 1e-82 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-36 | C2H2 family protein |