PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0341529.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 463aa    MW: 51100.1 Da    PI: 6.8512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0341529.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.7e-063543921154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Lj0g3v0341529.1 354 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 392
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.46E-7353396No hitNo description
SuperFamilySSF474591.31E-11353410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049354398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9357400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MADDQFQASG NWWESARNVR FESGESQSSS SGLTNFGGWQ QQQHHHHDNT ISASVSNSSV  60
VFHDSQKLQP PDSAATSATN DPNLHMMMGL GLSPRAMDWN QASLLRGSEK ASEGSFRSML  120
QENSSPNFQQ ETEGVGVGVG LSQVHWRPEK LFTADSSSND FKQVVNRGFS LDQTQFSPQY  180
SSGDSNVTSQ SLPCNFQIDH SYGNSSILQG LLGPDQSNNH QQPQQGSFEN RPMNNFPYSP  240
SYGFNNSNNE LVPSWSKVPQ FLRASPPKQP QANNQLHFTN NAPFWNASEA PIKDARSSFF  300
PSLQSPFPTP SFDTQSKNIS EVRDSSAVVK KSGSEPAPKR SRNETPSPLP AFKVRKEKMG  360
DRITALQQLV SPFGKTDTAS VLSEAIEYIK FLHEQVTVLS TPYMKSGAPI QHQQNSGKSK  420
EAEGPKQDLR SRGLCLVPVS STFPVTHEPT VEYWTPTFGG TYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0341529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150398e-57AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133119.10.0hypothetical protein PHAVU_011G153000g
SwissprotQ8GXT32e-83BH123_ARATH; Transcription factor bHLH123
TrEMBLV7AJT60.0V7AJT6_PHAVU; Uncharacterized protein
STRINGXP_007133119.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]