PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0340919.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 370aa    MW: 41425.5 Da    PI: 8.5811
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0340919.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36251172103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw e+ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll+
  Lj0g3v0340919.1  25 FLTKTYQLVDDPATDHIVSWGEDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLC 109
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Lj0g3v0340919.1 110 EIHRRKTA 117
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.38E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MALLLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FIVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPN  120
QTGINHHHHG GFFPFSSRAS ISPDSEDLQQ QTNWCDSPPP LITSSSPKGV SAATAAAAMM  180
MNSGASYGTS VTALSEDNER LRRSNNMLMS ELAHMKKLYN DIIYFVQNHV KPVAPSNSYS  240
SSSMLLCNTV ASSTPIPSNV PLMQRPMNQV MGYYSTNPKQ VSHNHHHHHQ PQNQTNVVVN  300
SPTNTSRSSI TVSGEANNNN SSNNTCKTKL FGVSLQSKKR VHPDSDTNKL ARLVLEKDDL  360
GLNLMPRSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212111717123Heat shock factor protein 1
5d5u_B1e-212111626131Heat shock factor protein 1
5d5v_B1e-212111626131Heat shock factor protein 1
5d5v_D1e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0340919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356466.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-122HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A371FL020.0A0A371FL02_MUCPR; Heat stress transcription factor B-4
STRINGAES733091e-180(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-110heat shock transcription factor B4