PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0337739.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 359aa    MW: 40913.7 Da    PI: 9.3709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0337739.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-184893147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Lj0g3v0337739.1 48 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 93
                     899*****************************.***********996 PP
2Myb_DNA-binding59.19.5e-19100143146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Lj0g3v0337739.1 100 RRPFTEEEEERLLAAHRVHGNK-WALIARLFP-GRTDNAVKNHWHV 143
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.5864394IPR017930Myb domain
SuperFamilySSF466891.31E-2947141IPR009057Homeodomain-like
SMARTSM007178.4E-154796IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2749101IPR009057Homeodomain-like
CDDcd001674.42E-145192No hitNo description
PfamPF139212.8E-1751111No hitNo description
PROSITE profilePS5129428.24995149IPR017930Myb domain
SMARTSM007176.4E-1699147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21102148IPR009057Homeodomain-like
CDDcd001671.85E-7111142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFKISLSKIS PPKSSASIHT LTNRTTLSPI HPMEDSSAGD DTKNTCPRGH WRPAEDEKLR  60
QLVEQYGAQN WNSIAEKLQG RSGKSCRLRW FNQLDPRINR RPFTEEEEER LLAAHRVHGN  120
KWALIARLFP GRTDNAVKNH WHVIMARKQR EQSKLSGKRS FQDLYDDSNT SIHHFPDHKR  180
LKSHQDLLFS TRIGLENGRF FDFRSHIEKV RNKLVSDTPS SSLASWNFAS VPITTSNSYP  240
IMDSVRKLGT SSDANYLLEC SRSSSDRFVY RICPNPTTTT SFSLPNYKRV VPNPFGCLGS  300
SDDHGRIERD LMSFCDNSST LSKLRASAEE KQQEDYEASV EHKEVPFIDF LGVGGHSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32481487107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0337739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-42AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338971.11e-169transcription factor MYB54-like
TrEMBLA0A371FX081e-157A0A371FX08_MUCPR; Transcription factor MYB52
STRINGGLYMA06G12691.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-63myb domain protein 52