PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0336269.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 335aa    MW: 37563.8 Da    PI: 7.1469
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0336269.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-1080108533
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                      k  rr+++NReAAr++R+RKka++++Le+
  Lj0g3v0336269.2  80 KGLRRLAQNREAARKCRLRKKAYVQQLET 108
                      5679***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.4E-576136IPR004827Basic-leucine zipper domain
PfamPF001704.9E-880109IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.22E-780114No hitNo description
Gene3DG3DSA:1.20.5.1706.4E-882115No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
PfamPF141446.6E-27169242IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSSSSAQLVI AKRMDIYEPF HQVTMWGDSF KIDGSLNSIA SPMFMMNTSM ENKSVCTPHE  60
SSSREPSGDD QETTNKAVTK GLRRLAQNRE AARKCRLRKK AYVQQLETSR LKLMQLELEV  120
KKARNQGLYT GSGLDVSYMG SSGTINSGVS VFEIEYGRWV EEQDRQNVEL RNALQTHAPD  180
NMQLQILVEG SLSHYSKLFK MKADAAKADV FYLFSGSWKA SVERLFLWIG GSRPSQLLNI  240
IVPQLENLSD EQITSINNLR LSSQQVEDAF SLGLEKLQQS LVDNILIDPL VEGNFGLQMA  300
AAMDNAKALA SFVNQADHLR HQTLLYMSRI LTIGQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.109810.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0336269.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1486940.0BT148694.1 Lotus japonicus clone JCVI-FLLj-1D4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234899.10.0transcription factor TGA7
RefseqXP_020234900.10.0transcription factor TGA7
SwissprotQ392371e-116TGA1_ARATH; Transcription factor TGA1
TrEMBLI3T7J60.0I3T7J6_LOTJA; Uncharacterized protein
STRINGXP_007141120.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-113bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]