PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0334719.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 103aa    MW: 11981.7 Da    PI: 10.4487
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0334719.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.9e-201764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Lj0g3v0334719.1 17 KGPWTAEEDRLLIEYVTLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 64
                     79******************************9*************97 PP
2Myb_DNA-binding315.7e-1071103236
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                      g  T++E+  ++++++++G++ W+tIar ++ gRt
  Lj0g3v0334719.1  71 GHITPQEESVILELHARWGNR-WSTIARNLP-GRT 103
                      667******************.*********.**9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1511268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-231267IPR009057Homeodomain-like
SuperFamilySSF466895.24E-2715103IPR009057Homeodomain-like
SMARTSM007173.4E-161666IPR001005SANT/Myb domain
PfamPF002491.1E-171764IPR001005SANT/Myb domain
CDDcd001678.13E-121964No hitNo description
Gene3DG3DSA:1.10.10.606.3E-1668103IPR009057Homeodomain-like
PROSITE profilePS5129413.76969103IPR017930Myb domain
SMARTSM007176.769103IPR001005SANT/Myb domain
PfamPF002491.1E-770103IPR001005SANT/Myb domain
CDDcd001679.66E-574103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MARNMVCGVT EDDGWRKGPW TAEEDRLLIE YVTLHGEGRW NSVARLTGLK RNGKSCRLRW  60
VNYLRPDLKK GHITPQEESV ILELHARWGN RWSTIARNLP GRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-221710327112MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0334719.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970471e-103BT097047.1 Soybean clone JCVI-FLGm-15J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364624.16e-60myb-related protein 305-like
SwissprotQ10MB43e-43MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0M3Q0K78e-58A0A0M3Q0K7_LABPU; R2R3-MYB factor
TrEMBLV7BE968e-58V7BE96_PHAVU; Uncharacterized protein
STRINGXP_007144143.11e-58(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-57myb domain protein 305
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]