PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0332129.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26209.2 Da    PI: 9.7367
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0332129.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.21.4e-152464444
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      +k+++q +fskRrng++ K  ELS+LC+ e a+i+ s+++
  Lj0g3v0332129.1 24 ADKRRNQLSFSKRRNGLFNKLTELSILCQSETALIVTSKNN 64
                     5899**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-81777IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-132188IPR002100Transcription factor, MADS-box
PfamPF003198.9E-142564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.5212564IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAPSQPRSKR NTTTITMEKK KTQADKRRNQ LSFSKRRNGL FNKLTELSIL CQSETALIVT  60
SKNNDGGGGE IFACGYPSPD AVIRRFLTGG KAPLPAQRWR EEKVEAHRSE YEGMQERLKE  120
EQRKLQAIIE EKENKGFVFP SWWETPIDDM GLDSVEQLKN SMEILKLNLI ARQRYCEMIP  180
LVAPPPPPPQ AMAALPPQPP LTNSPPVLDA RFGVWVPCGH RVSKFTPVIE SN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0332129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027337347.11e-47agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-18AGAMOUS-like 62