PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0329239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 39310.9 Da PI: 6.7454 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 108 | 153 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Lj0g3v0329239.1 108 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 153 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.4e-18 | 160 | 203 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Lj0g3v0329239.1 160 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 203 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.17 | 103 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 107 | 156 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.24E-28 | 108 | 201 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-16 | 108 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 109 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.03E-12 | 111 | 152 | No hit | No description |
PROSITE profile | PS51294 | 26.929 | 155 | 209 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 159 | 207 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 160 | 202 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 162 | 208 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-10 | 162 | 202 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MVYADMVSLS LNSNFSNVSS SQESNHACKG SGLESGSTNW TFPFMRECLP RSFEEENPNM 60 DDVEAKSSDC SDEAGETNHN ADFNEENPNE NPSICKEGDS GQSKLCARGH WRPAEDSKLK 120 ELVALYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFSEEEEER LMQAHRIYGN 180 KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSNAYRRRR LNNQSVHKRT TDHQQNQTLA 240 CRSDSTTELT EHHASSHYLL NGSVLNNNNM AVELTTHMSG SGSRNQAPPH VIEAILTWWE 300 SLSVISEAGT VLVMNFIIII TINNIINIIN NIIKCLVSTH IIPNNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-32 | 108 | 208 | 7 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 220 | YRRRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0329239.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 8e-78 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022726643.1 | 1e-114 | transcription factor MYB117-like | ||||
Refseq | XP_027362789.1 | 1e-114 | transcription factor MYB108-like | ||||
TrEMBL | A0A151UBA6 | 1e-113 | A0A151UBA6_CAJCA; Transcription factor MYB44 | ||||
STRING | Gorai.013G086400.1 | 1e-113 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 8e-77 | myb domain protein 105 |