PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0329239.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 346aa    MW: 39310.9 Da    PI: 6.7454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0329239.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-16108153147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Lj0g3v0329239.1 108 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 153
                      899*****************************.***********996 PP

2Myb_DNA-binding569.4e-18160203146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Lj0g3v0329239.1 160 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 203
                      678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17103154IPR017930Myb domain
SMARTSM007172.9E-14107156IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-28108201IPR009057Homeodomain-like
PfamPF002496.6E-16108153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-25109161IPR009057Homeodomain-like
CDDcd001674.03E-12111152No hitNo description
PROSITE profilePS5129426.929155209IPR017930Myb domain
SMARTSM007171.8E-14159207IPR001005SANT/Myb domain
PfamPF002491.9E-14160202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-20162208IPR009057Homeodomain-like
CDDcd001671.21E-10162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVYADMVSLS LNSNFSNVSS SQESNHACKG SGLESGSTNW TFPFMRECLP RSFEEENPNM  60
DDVEAKSSDC SDEAGETNHN ADFNEENPNE NPSICKEGDS GQSKLCARGH WRPAEDSKLK  120
ELVALYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFSEEEEER LMQAHRIYGN  180
KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSNAYRRRR LNNQSVHKRT TDHQQNQTLA  240
CRSDSTTELT EHHASSHYLL NGSVLNNNNM AVELTTHMSG SGSRNQAPPH VIEAILTWWE  300
SLSVISEAGT VLVMNFIIII TINNIINIIN NIIKCLVSTH IIPNNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-321082087107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0329239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150438e-78AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022726643.11e-114transcription factor MYB117-like
RefseqXP_027362789.11e-114transcription factor MYB108-like
TrEMBLA0A151UBA61e-113A0A151UBA6_CAJCA; Transcription factor MYB44
STRINGGorai.013G086400.11e-113(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-77myb domain protein 105