PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0322209.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 336aa    MW: 38148.2 Da    PI: 6.63
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0322209.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-162976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++++  G g+W++ ar  g++Rt+k+c++rw++yl
  Lj0g3v0322209.1 29 RGPWTVDEDLALINYIANNGEGRWNSLARSAGLKRTGKSCRLRWLNYL 76
                     89********************************************97 PP
2Myb_DNA-binding50.45.1e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Lj0g3v0322209.1  82 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 125
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9682480IPR017930Myb domain
SuperFamilySSF466894.12E-3026123IPR009057Homeodomain-like
SMARTSM007171.7E-132878IPR001005SANT/Myb domain
PfamPF002493.2E-152976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-213083IPR009057Homeodomain-like
CDDcd001671.00E-103176No hitNo description
PROSITE profilePS5129418.37881131IPR017930Myb domain
SMARTSM007172.9E-1481129IPR001005SANT/Myb domain
PfamPF002498.5E-1582125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2284130IPR009057Homeodomain-like
CDDcd001671.89E-7102125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEVKGRVSNS SFNNNNTLIQ SEDEMDLRRG PWTVDEDLAL INYIANNGEG RWNSLARSAG  60
LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHSRW GNRWSKIAQY LPGRTDNEIK  120
NYWRTRVQKH AKQLKCDVNS KQFKDAMRYL WMPRLVERIQ AAAASTATAT TASPAFFAGA  180
NTTVTAHNNT TYNNFEVHSG NMMLAPTIMS NNNNFGGSHV TQSYTTPENS SNGTASSDSF  240
GTQVSPVSDL THQDYYNNVP VGSNNNVPNP DYYYQQAHQL GFSDCITSPS GMFPTQEMEM  300
DYFNSMDPNT PWIQSGDTTD NFWNVDNMLL FQQLNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25261294106B-MYB
1gv2_A6e-25261291103MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-252612324120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0322209.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737472e-81AB573747.1 Lupinus albus LaMYB24 mRNA for R2R3-MYB transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208715.11e-154transcription factor MYB108
SwissprotQ9FGY36e-90MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A371IIG71e-157A0A371IIG7_MUCPR; Transcription factor MYB2 (Fragment)
STRINGXP_004486524.11e-147(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-85myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]