PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0321019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 223aa MW: 24124.9 Da PI: 6.6005 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 49.2 | 1.3e-15 | 55 | 87 | 4 | 37 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegt 37 +Y+eClkNhA+ +Gg+a+DGC Efm++ g egt Lj0g3v0321019.1 55 GKYRECLKNHAVGMGGYALDGCLEFMAA-GPEGT 87 68*************************9.55544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-9 | 51 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.4E-13 | 56 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 16.47 | 57 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-32 | 147 | 222 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.4E-21 | 148 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-27 | 161 | 216 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDYDEQEEEL VMAGGGGASY DDDDSSLANP TRVKMPSPVD DPAAMMVVVR NTGKGKYREC 60 LKNHAVGMGG YALDGCLEFM AAGPEGTRHQ PPPGQPQYAA CYRATPAGYL HVAGPNRGSG 120 AATLALPIGG GPQGARELMD HDDVSDRSGG GGEGSNSRAG KRFRTKFTHE QKEKMLEFAE 180 SAGWRIQRHD DNVVEEFCNE IGVKRHVLKV WMHNNKHTLG KKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-26 | 161 | 218 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0321019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020216790.1 | 1e-75 | zinc-finger homeodomain protein 1 | ||||
Swissprot | A2Z259 | 1e-45 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A0S3R2K2 | 6e-71 | A0A0S3R2K2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA02G04550.2 | 2e-65 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-40 | homeobox protein 22 |