PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0318769.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 274aa    MW: 30874.6 Da    PI: 7.0886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0318769.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161563148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEde lv+ +k+ Gg+ +W++ ++  g+ R++k+c++rw +yl
  Lj0g3v0318769.1 15 RGPWTSEEDEALVNFIKKNGGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 63
                     89*******************9***********99************97 PP
2Myb_DNA-binding53.45.7e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  Lj0g3v0318769.1  69 RGPFTPEEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2431063IPR017930Myb domain
SuperFamilySSF466896.24E-2912110IPR009057Homeodomain-like
SMARTSM007171.5E-111465IPR001005SANT/Myb domain
PfamPF002497.3E-141563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-211670IPR009057Homeodomain-like
CDDcd001672.69E-81763No hitNo description
PROSITE profilePS5129426.164118IPR017930Myb domain
SMARTSM007177.3E-1668116IPR001005SANT/Myb domain
PfamPF002495.0E-1669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2771119IPR009057Homeodomain-like
CDDcd001671.27E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRKPCCDDK IGLKRGPWTS EEDEALVNFI KKNGGHGSWR SLPKLAGLLR CGKSCRLRWT  60
NYLRPDIKRG PFTPEEEKLV IQLHAILGNR WAAIASQLPG RTDNEIKNLW NTHLKKRLIS  120
MGIDPQTHEP VASSTYPIDK SHASTATRHM AQWESARLEA EARLSRESSL FSNNTSNKTN  180
SDYFLRMWNS EVGQSFRAKN KSDDDSKARC QSPMSLVGSS TPESNVKEDF EWKFSDSCGG  240
IVADSSSDDL EDSSDTALQL LLDFPIYNDM NFLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28131185108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0318769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510807.11e-154transcription factor MYB41-like
SwissprotQ9M2D91e-118MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S2YW051e-153A0A1S2YW05_CICAR; transcription factor MYB41-like
STRINGXP_004510807.11e-154(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-115myb domain protein 17