PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0317419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bZIP | ||||||||
Protein Properties | Length: 201aa MW: 21937.5 Da PI: 10.4171 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.5 | 1.6e-14 | 1 | 45 | 10 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + +NRe+ArrsR+RK+a + Le+ v +L++eN++L k+ + ++ Lj0g3v0317419.1 1 MLSNRESARRSRRRKQAHLTDLETQVSQLKGENSSLLKRFSDVSQ 45 579*********************************999877666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.8E-10 | 1 | 56 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-12 | 1 | 43 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.783 | 1 | 48 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.37E-10 | 1 | 45 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.7E-11 | 2 | 47 | No hit | No description |
Pfam | PF12498 | 2.0E-43 | 63 | 190 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MLSNRESARR SRRRKQAHLT DLETQVSQLK GENSSLLKRF SDVSQKFNDS AVDNRVLKAD 60 VETLRAKVKM AEETVKRITG LNPMFHAMSE ISSMGMPPFA GSPSDNSVDA AVPVQDNSHH 120 QQFYRPVSNN PKPRHDLRVN NGLGEISSIE NVQQQNGAAV AGGNKMGQAA APPQRVASLE 180 HLQKRIRGGV DSCGAPSNGE Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 15 | RRSRRRKQ |
2 | 10 | 15 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.279 | 1e-141 | cell culture| floral bud| pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0317419.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009810 | 0.0 | AP009810.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT29J15, TM0280b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495799.1 | 1e-103 | light-inducible protein CPRF2-like isoform X1 | ||||
Refseq | XP_004495800.1 | 1e-103 | light-inducible protein CPRF2-like isoform X2 | ||||
Swissprot | Q99090 | 1e-71 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A1S2XWX9 | 1e-101 | A0A1S2XWX9_CICAR; light-inducible protein CPRF2-like isoform X1 | ||||
TrEMBL | A0A1S2XY94 | 1e-102 | A0A1S2XY94_CICAR; light-inducible protein CPRF2-like isoform X2 | ||||
TrEMBL | A0A2K3NI45 | 1e-103 | A0A2K3NI45_TRIPR; Light-inducible CPRF2-like protein | ||||
STRING | XP_004495799.1 | 1e-102 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4176 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.1 | 1e-39 | bZIP family protein |
Publications ? help Back to Top | |||
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