PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0310339.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 696aa    MW: 77335.1 Da    PI: 6.143
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0310339.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.12e-8736869531374
             GRAS  31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
                      a p+g+p+qR+a+y++eAL+  l++   ++ + ++ s+ s    + ++ a+k fse+sP+l+f+++t+Nq + ea+e+ +r+HiiDfdi+ G+Q
  Lj0g3v0310339.1 368 ALPTGKPFQRAAFYMKEALQLMLHS---NIHNLMAFSPIS---FIFKIGAYKSFSEISPVLQFANFTCNQSLIEALERFDRIHIIDFDIGFGVQ 455
                      6799********************9...666666777776...9************************************************** PP

             GRAS 125 WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldes 217
                      W +++q+La R++g+psl++T+v+sp++ ++ el+ t ++L+++A+ ++++fefnvl  ++l++   +   ++ ++Ea+ Vn+ ++ ++ +   
  Lj0g3v0310339.1 456 WSSFMQELAFRSSGAPSLKVTAVVSPTTCNEFELNFTCDNLNQYAKDINMSFEFNVLNIESLNSPtCPLPVHFFENEAIGVNMPISSFTNY--- 546
                      *********************************************************777666651456779999**********888887... PP

             GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                         +s  +  +++vk+l+Pk+vv  ++++d+ + ++ + + + l++ysal++sl+a    +++  +k+Er++++++i+++v   + +    +e+
  Lj0g3v0310339.1 547 ---PSLFPLAVQFVKQLRPKIVVTLDRNCDRIDLPLPNNIGHVLQCYSALLESLDAV-NVNQDVLQKIERHFVQPAIKKIVLGHHHS----QEK 632
                      ...55556899*******************************************665.46889999****************99998....99* PP

             GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      l  Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W++++L+svS Wr
  Lj0g3v0310339.1 633 LTPWRNLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWR 695
                      **************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.062312675IPR005202Transcription factor GRAS
PfamPF035147.0E-85368695IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MKAMPLSPFE EFQGKKGVLL DFTSSSDSFS LLLHHHHHQN QPQKWTCSDK KEDFCYVGST  60
EPNSVLDSRR SPTSPTSFST MSSSLGSSSS NSSGNGGGGG SANTTATAVP TVSENLPHED  120
WDGQDQSLLR LIMGDVEDPS AGLTKLLQST GCGSQNVDFS GNFGVVDQGL NMESDINSSM  180
PESYNYPGFG FNSGNMDAHN AKVSESMFSS SGNMNNPLLV SSSPGGFSSQ QQEFGVVGEK  240
PQVINPQFLL NQNQVQFSEN PSFFVPLRYP QVQEQQVFSQ HMVGHNYQAP RLPLLGSGQE  300
MFVKRPQTQV PLFPHHIQQQ QSLVVAPSGK QQKVNPTGDD ANHQLQQAIF DQLYKTAELI  360
EAGNPVQALP TGKPFQRAAF YMKEALQLML HSNIHNLMAF SPISFIFKIG AYKSFSEISP  420
VLQFANFTCN QSLIEALERF DRIHIIDFDI GFGVQWSSFM QELAFRSSGA PSLKVTAVVS  480
PTTCNEFELN FTCDNLNQYA KDINMSFEFN VLNIESLNSP TCPLPVHFFE NEAIGVNMPI  540
SSFTNYPSLF PLAVQFVKQL RPKIVVTLDR NCDRIDLPLP NNIGHVLQCY SALLESLDAV  600
NVNQDVLQKI ERHFVQPAIK KIVLGHHHSQ EKLTPWRNLF LQSGFSPFTF SNFTEAQAEC  660
LVQRAPVRGF QVERKPSSLV LCWQRKELIS VSTWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2737069451378Protein SCARECROW
5b3h_A2e-2737069450377Protein SCARECROW
5b3h_D2e-2737069450377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.26360.0cell culture| floral bud| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0310339.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336463.10.0scarecrow-like protein 6 isoform X1
SwissprotO813161e-116SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0B2S3A60.0A0A0B2S3A6_GLYSO; Scarecrow-like protein 6
TrEMBLI1JKU20.0I1JKU2_SOYBN; Uncharacterized protein
STRINGGLYMA03G03760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-105GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]