PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0308719.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 190aa MW: 21838.3 Da PI: 5.1897 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.4 | 1.3e-09 | 74 | 96 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 te Cr+++r+G CkyG C ++H Lj0g3v0308719.1 74 TEVCRYYQRYGVCKYGKDCWYIH 96 99*****************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.409 | 51 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-7 | 73 | 99 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-7 | 74 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-7 | 74 | 98 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.399 | 132 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 19 | 132 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGFVSLEKLV GISTQEVTVL IRASERSMNN PATETNVRQK QILVEEELPE RPGEPECRNY 60 LKTGDCKEAT ERSTEVCRYY QRYGVCKYGK DCWYIHTRGN SFDQASERSM TNPATETNDH 120 QKKISEEEFP ERSGEPECRS YLETGDCKSK SDCLPLQNLS DKGLPLRPDQ NVCSHYSCKF 180 ESACKYPYYP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0308719.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422887.1 | 5e-26 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2 | ||||
TrEMBL | A0A438GIL5 | 6e-23 | A0A438GIL5_VITVI; Zinc finger CCCH domain-containing protein 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 3e-12 | C3H family protein |