PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0303659.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 652aa    MW: 71724.5 Da    PI: 6.8119
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0303659.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.22.2e-2862145186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k+++ g++r++k+Ckek+en+ k++k++keg+++++  + +t+++fdql+
  Lj0g3v0303659.1  62 RWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKS--DGKTYRFFDQLQ 145
                      8********************************************************************964..5557******98 PP
2trihelix102.92.5e-32471555186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k ev aLi++r++++++++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+
  Lj0g3v0303659.1 471 RWPKAEVEALIKLRTSLDTKYQDSGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLD 555
                      8*********************************************************************8.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002559121IPR001005SANT/Myb domain
CDDcd122032.88E-2361126No hitNo description
PROSITE profilePS500906.70261119IPR017877Myb-like domain
PfamPF138373.1E-1861147No hitNo description
SMARTSM007177.5E-5468530IPR001005SANT/Myb domain
PROSITE profilePS500907.399470528IPR017877Myb-like domain
CDDcd122031.91E-28470535No hitNo description
Gene3DG3DSA:1.10.10.607.8E-5470527IPR009057Homeodomain-like
PfamPF138371.5E-22470557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MLGDSAVLGT AGGGGSSGDA AVAAAAAAAR AHDGGDTAAG GGGGGSNSGD DERGDRSFGG  60
NRWPRQETLA LLKIRSDMDV AFRDASVKGP LWDEVSRKLA DLGYHRNAKK CKEKFENVYK  120
YHKRTKEGRS GKSDGKTYRF FDQLQALENN PSIQSPTAPK PPQQQTASLP AILSPTPSKL  180
PKQTPPPATT PALSSLSLPT TTVPLPLPPT LVNTIPSTTS ITVPSIAPSY PPSNPSFFPS  240
TTNPPHTITP PSFPNIPTDL LSDYSTSSTS SDETMMEAGG TRKRKRKWKD FFERLMKEVM  300
EKQEQLQKRF LEAIEKREQE RTAREEAWKM QEMQKINRER EILAQERSIA AAKDAAVMTF  360
LQKISEQQNL TPTSNNNNNN AQQPQDPAPA PSPAPVPVPV PVSVPAPVQT PILVAQQITA  420
APVPQAPQPL APQEVPQQHQ HHQVQQQVTN LEMIKGDNGE SVGVMPASSS RWPKAEVEAL  480
IKLRTSLDTK YQDSGPKGPL WEEISALMRK MGYNRNAKRC KEKWENINKY FKKVKESNKK  540
RPEDAKTCPY FHQLDSLYRE KSKMMESSLM KPESAAAATA MMAPLMVRPE QQWPPQPVPD  600
VTMVDAGSDR RHSEEEDYDD DNDYDDKDIG DEDEDDEGTG KYEIVASKPA PR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.94040.0floral bud| pod
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0303659.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3724991e-102AF372499.1 Glycine max GT-2 factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203525.10.0trihelix transcription factor GT-2
SwissprotQ391177e-81TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A151R8Q10.0A0A151R8Q1_CAJCA; Uncharacterized protein
STRINGGLYMA02G09060.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-59Trihelix family protein